3300017233: Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in enriched f/2 medium with seawater, 27 C, 0 psu salinity and 313 ?mol photons light - Astrosyne radiata 13vi08-1A (MMETSP0418)

Overview

Basic Information

• IMG/M Taxon OID: 3300017233
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212078 | Ga0186366
• Sample Name: Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in enriched f/2 medium with seawater, 27 C, 0 psu salinity and 313 ?mol photons light - Astrosyne radiata 13vi08-1A (MMETSP0418)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25447972
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Lithodesmiophycidae → Lithodesmiales → Lithodesmiaceae → Helicotheca → Helicotheca tamesis	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Lithodesmiophycidae → Lithodesmiales → Lithodesmiaceae → Ditylum → Ditylum brightwellii	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): 13.4427
  • Long. (^o): 144.6428
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051162	Metagenome / Metatranscriptome	144	Y
F067805	Metagenome / Metatranscriptome	125	Y
F081743	Metagenome / Metatranscriptome	114	Y
F089930	Metagenome / Metatranscriptome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186366_101389	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Lithodesmiophycidae → Lithodesmiales → Lithodesmiaceae → Helicotheca → Helicotheca tamesis	2598
Ga0186366_101457	All Organisms → Viruses → Predicted Viral	2563
Ga0186366_104826	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Lithodesmiophycidae → Lithodesmiales → Lithodesmiaceae → Ditylum → Ditylum brightwellii	1603
Ga0186366_112195	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	762

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186366_101389	Ga0186366_1013893	F067805	MGGKKNKQAEEVQLSKKDAKKVAKLEAQIPYYQGRGQNDEVDKIKEQIETIWTKAREAAY
Ga0186366_101457	Ga0186366_1014573	F081743	MLERNIEDPLWLDVDCPKFGLMAEMSRVIRVSFSSEIDGLYFHKSFKGSGHPFYDSVYRKAARINKDLADHMDTCIVR
Ga0186366_104826	Ga0186366_1048262	F089930	GYLSKAIGRRGDKAALEPLSLYDILEVKAGCSGYDHTELPSASSKKSGKKGKNDNRQASLFLTIKATPTPEASFRSYILKFKSRGARNDVLNGLRSILADMQIHEGVSISSLQQGEDEEEDEILVPLSEVHNAINREREAYDRLLLLLLQGQEDLKEKEDEMLGLRGKLENVVAESADKDRVQANDSKLIMQLSKKLETLLMDNEDLRDQNDRLNARLVSVECEKMNLMSG
Ga0186366_112195	Ga0186366_1121951	F051162	TTAPLLCPPLTTTTSASIRLLSMPLVKIFAKQTLQKPIPLVPLQSKLCDIWGTKPNTTKLMLQRVEDWTNESFQEDCYVDIRAKGTEARTREVVLGGMKKVQDAFREHDLIANVRLETYEGPRYFHLPPTTSS