Basic Information | |
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IMG/M Taxon OID | 3300017224 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0212064 | Ga0186352 |
Sample Name | Metatranscriptome of marine eukaryotic communities from North Sea grown at 20 C, 30 psu salinity and 440 ?mol photons light - Ammonia sp. (MMETSP1384) |
Sequencing Status | Permanent Draft |
Sequencing Center | National Center for Genome Resources |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 45711740 |
Sequencing Scaffolds | 15 |
Novel Protein Genes | 15 |
Associated Families | 12 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa | 7 |
Not Available | 6 |
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera | 2 |
Ecosystem Assignment (GOLD) | |
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Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine biome → marine water body → sea water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | North Sea | |||||||
Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F010522 | Metatranscriptome | 302 | N |
F015563 | Metagenome / Metatranscriptome | 253 | Y |
F015960 | Metatranscriptome | 250 | N |
F054572 | Metatranscriptome | 139 | N |
F058691 | Metatranscriptome | 134 | Y |
F059642 | Metatranscriptome | 133 | N |
F070864 | Metatranscriptome | 122 | Y |
F070865 | Metatranscriptome | 122 | Y |
F073071 | Metatranscriptome | 120 | N |
F086594 | Metatranscriptome | 110 | N |
F091322 | Metagenome / Metatranscriptome | 107 | N |
F094899 | Metatranscriptome | 105 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0186352_100039 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa | 6534 | Open in IMG/M |
Ga0186352_104842 | Not Available | 2077 | Open in IMG/M |
Ga0186352_110584 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa | 1405 | Open in IMG/M |
Ga0186352_111531 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa | 1326 | Open in IMG/M |
Ga0186352_112338 | Not Available | 1265 | Open in IMG/M |
Ga0186352_114119 | Not Available | 1137 | Open in IMG/M |
Ga0186352_117433 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera | 929 | Open in IMG/M |
Ga0186352_118682 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa | 859 | Open in IMG/M |
Ga0186352_118853 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa | 851 | Open in IMG/M |
Ga0186352_119315 | Not Available | 827 | Open in IMG/M |
Ga0186352_119874 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa | 799 | Open in IMG/M |
Ga0186352_121135 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa | 739 | Open in IMG/M |
Ga0186352_122364 | Not Available | 685 | Open in IMG/M |
Ga0186352_122387 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera | 685 | Open in IMG/M |
Ga0186352_125796 | Not Available | 552 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0186352_100039 | Ga0186352_1000392 | F086594 | MAAKRSILQFVSKRYFQPRATKTPFPPPHPIKTKFDMSHTEPIKNYELAVSDSGDNWEKHNALYEHYQRGEYFVTHSIPDFEKAYGGYYGAHWPAHFGGGYHKFLRRRMDQPGQYNAKYPWQNFLRRKCDERGVHWDFPRGQDYQIIFRWLLSIYAFIFVFRQWKNYGAHKANAKPLEHDPVYPLRFNLPFYVYILHQQRAPLLE |
Ga0186352_104842 | Ga0186352_1048421 | F094899 | EMMLSRGSKRGAISILSTNKRSFFDYIRVANEVDAGQSLDEIASNMTKESDTKESASFGWQWLEWFQQNAPEKYAEYASNRSQFQRWEQYLGERGVKTSKKISFEDYKKRIADASFVDDLEVNYYVERDTISSIENMQTLNSWPSSSVASFQQNCEKNGDLIVKPLTEEDKQRQKETLENAELYDEKMKLMAQEILKDFEQIDAERMMLGQETFLMELSQHPQFAEAMEDTYTAKQNYLDYAMLPIHRDYVKREKLNAIQDEERRKAFLERFEYGTKIYNGMDCSVPP |
Ga0186352_110584 | Ga0186352_1105842 | F010522 | MSRRGFADEKGAERVETRLDGLMMTDAEVDKELSKHFDEEGSYKPPHMDSFVSMTRRDCMMNVRIPPLGIEPPPFGEDQIREITEKTTLTRDNIEWARKHWNDDSIKPDQKEHVKIAQDMLEMYKKGVSFATINLWLDYYSGADIGGKGAIYNRSWARIDS |
Ga0186352_111531 | Ga0186352_1115311 | F073071 | MMWQYIQKRHAGGGHSVPPTPHPFLAKPDELQPVPAENVGRTGYGEIRGELRNIMGGPVEEFNDFPPEMGSLERGRWFPWSLRDDYPPMITTSAEQNRRIWSEMHMEQLLDHHPVHEVHASELPDYHYFSPINNELDHKLPKENAVTEVSQQYAKDITDVPRFFRSGVPKLPRQEQDWYVPRLADGRFDWKRNIAQNGNTASLFDRKGWDRRFHLKLNVGNPPIPHHTTGARQWAQMPIYFRVAEAPLTKRLGRHLYASQVDKHLWFVCIYFGSLLYISSKGGHWRQMVWENDPYNVDVCFVSENRKKGGFHGII |
Ga0186352_112338 | Ga0186352_1123381 | F070865 | VHFNSSVRSSPLVETEGRYLFCTMSVPFFSDFTKRTKDFFKRDKYDLGQVVEVSTKCGDSISVKTKVSHADSVKTKFTATVKRPNGRQIEVTEDLRKGLSLKLKLPKFYRNIDIETEHTNADVELTAKYKPAADAKNAFYSTKVTGYYNPDRDGARVCKTKAEFAVGDDQLNLSVGGDITVVDKSKHDAHTGAEPKVTAYTLGFLYTPTKDSQYSIIYTPDPQSNGMEYSFTCFRKMSDKCQLAAKADGKVDTKLTGFPPVVTLAGGWTLGANYMQGFVNSRKEYGLAYKVKVSDSATLNLGLSSYLSDEQRMETRFGYKLQV |
Ga0186352_114119 | Ga0186352_1141191 | F015960 | MMAGPALVMTSMRTAVGGTKGAPPISIDDLYGLCFLAEPSVRPPVERQPQDMFDVDQRINEVVVYVNGGLHATKDKVSEDFVRHMFEASVIFFPRDASNKPQEFRDILKAQGGTDELPQLWIKGKLVGHGQELKDFDRVWELCTPARRPWPREGSYQKGFYNRSGVTQSDQIMGTQ |
Ga0186352_117433 | Ga0186352_1174332 | F015563 | SNQLQSASVSHTLSSSLHACMSAPKISRALASRPAFWGKWGIYNPNVAKEYLRQAYNRGYGQPLISGRENGYEATNFITYLARRWNYDWFKVIAMRIDSERTPLMVLRRQIWMARLEYWLRRFHARKAINRAAKVEWAYIKERLHQPMTWTGRDAQHFSLWLLNVIGFWCIGEAASRQKLTGYPVATPEWTPAKPKFAPGFWHLYDPFEDYPFDNQPNYITKQFQRSTWWHNSKETYWAPHRIPVAFASG |
Ga0186352_118682 | Ga0186352_1186821 | F091322 | MAAAAAASKEFPRIISNNLLTKSAFLSYSRYLAFGFGYFYAFCKALYLQSYVETEDQKKFAQLREAEISVNTLRGVTFHGPQLWDPEYTELQMKFRDCYPDFYLHPNDEFVYQTTRGRQREQKVKEDMHSEAVAFLKEWKASEGKR |
Ga0186352_118853 | Ga0186352_1188531 | F058691 | MFSFPPIAQRFLRSKTWWRVIRFSPGELFDGLTVKYPLVGIGVAVYGYHYFWKWPLQEAQENRFKRWRENWRAEVHYQEAIDWDTKQSRDEMREFLDAQKEKYGSLKKAMTAYERRSGKQAPPLVLGDPVYDHTMKRIGVPIKGDEEPSFLWDGTAYMKADEPPPTFADGKIRVPEAPRFYVDSN |
Ga0186352_119315 | Ga0186352_1193151 | F070864 | LNYSLSPLASIAIMSYENALKTVNFLLEVLEEADKPAPIDSGAKATTSTAAPVSDEKEEYFTSVEDDGVKEGSTVKVTTNLKRLDEAWAEAELGSNDEKGMYLGVIGKIMEVEEDDDTVQLRWANLDTCWMPIKACIDAKGAEPTLPSGMISHLDR |
Ga0186352_119874 | Ga0186352_1198741 | F073071 | YGEIRGELRNIMGGPVEELNDFPKDMGKLERGRWYPYSTRDEYPPFITTSAEQNSRVWTEMHMEQLLDHHPPHEVHASELPDYHYFPPIVNELDPKLPEESQVSELSLQYTADQTDVPRFFRTGVPKIPRHEQDWYVRRLSDGRFDWKRNIRENGYTASLFDHKGWDRRFLLKLNVPNPPMHTVGWRQWAQMSTYFRVAEWPLPKRLGRQLYASQFDKHVIFIAVYWGSLIWLSGNGGHWRELVWQNDPFNYDMCFASENRKKGG |
Ga0186352_121135 | Ga0186352_1211351 | F010522 | VLVSLFIGPFKSYRAHHLITMLSRIVSRSVISSKSSLISKISIRSFAAEKGEERVEGRLDGLMLSDDEIDKELAKHFDEEGSYTPPHMDAFPSMTRRDVMMNVRIPPLGIEPPPFGEDQIREITEKTSLSRENIEWTRKHWADESLKPDQVQHQKIATDMLEMYKKGVSFATINLWLDYYSGADVGSKNAIYNRSWARIDS |
Ga0186352_122364 | Ga0186352_1223642 | F059642 | CRRAVTASHIIQQQSLARPNNAVLLAKRNHVLDKRNYDPDIDPLFAVQQHARPWDHFALRANQNRQRRFQQYALWFSCVYLGWSVFKMVVIRPRLNKVEKWDYQAKYWRDGYWVREFPEGLVVKEYANGKVSIEPGQTSRPSLPRRALNFIFRIGDTR |
Ga0186352_122387 | Ga0186352_1223871 | F015563 | LLHFVEQSTMSAPKISRAAAARPAFWGKWGIYNPNVAKEYMRQAYNRGYGQPLISGKEYGFGTTPFLTYLARRWHYDWLKLIAMRVDSERTPLMVLRRQIWMARFEYWVRRWYARKAINRAAKVEWAYIKERISQPMTWTGRDVQHAGLWLLNVFAFFSIGEVVSRQYLYGYPVATPEWTPSRPKFVPGFWHVYDPLENYPFENQPNYITKQFQRSGWWHNSAETYW |
Ga0186352_125796 | Ga0186352_1257961 | F054572 | QPGPRHRGPVFITKIPPGFRLPALIFGYCFLTWNVRHWLFPYARTVHNVNLPIHSEREVQGTWHERFRKQEDIYRWGHIYAKMQEQRIQDAKRKGILPDNYPENEEQLARMDPAEFEAMMPEVTKIRFDVGVDRLDGVCALTNWPLPEGHGLEE |
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