| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300017224 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0212064 | Ga0186352 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from North Sea grown at 20 C, 30 psu salinity and 440 ?mol photons light - Ammonia sp. (MMETSP1384) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 45711740 |
| Sequencing Scaffolds | 15 |
| Novel Protein Genes | 15 |
| Associated Families | 12 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa | 7 |
| Not Available | 6 |
| All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | North Sea | |||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010522 | Metatranscriptome | 302 | N |
| F015563 | Metagenome / Metatranscriptome | 253 | Y |
| F015960 | Metatranscriptome | 250 | N |
| F054572 | Metatranscriptome | 139 | N |
| F058691 | Metatranscriptome | 134 | Y |
| F059642 | Metatranscriptome | 133 | N |
| F070864 | Metatranscriptome | 122 | Y |
| F070865 | Metatranscriptome | 122 | Y |
| F073071 | Metatranscriptome | 120 | N |
| F086594 | Metatranscriptome | 110 | N |
| F091322 | Metagenome / Metatranscriptome | 107 | N |
| F094899 | Metatranscriptome | 105 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0186352_100039 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa | 6534 | Open in IMG/M |
| Ga0186352_104842 | Not Available | 2077 | Open in IMG/M |
| Ga0186352_110584 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa | 1405 | Open in IMG/M |
| Ga0186352_111531 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa | 1326 | Open in IMG/M |
| Ga0186352_112338 | Not Available | 1265 | Open in IMG/M |
| Ga0186352_114119 | Not Available | 1137 | Open in IMG/M |
| Ga0186352_117433 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera | 929 | Open in IMG/M |
| Ga0186352_118682 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa | 859 | Open in IMG/M |
| Ga0186352_118853 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa | 851 | Open in IMG/M |
| Ga0186352_119315 | Not Available | 827 | Open in IMG/M |
| Ga0186352_119874 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa | 799 | Open in IMG/M |
| Ga0186352_121135 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa | 739 | Open in IMG/M |
| Ga0186352_122364 | Not Available | 685 | Open in IMG/M |
| Ga0186352_122387 | All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera | 685 | Open in IMG/M |
| Ga0186352_125796 | Not Available | 552 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0186352_100039 | Ga0186352_1000392 | F086594 | MAAKRSILQFVSKRYFQPRATKTPFPPPHPIKTKFDMSHTEPIKNYELAVSDSGDNWEKHNALYEHYQRGEYFVTHSIPDFEKAYGGYYGAHWPAHFGGGYHKFLRRRMDQPGQYNAKYPWQNFLRRKCDERGVHWDFPRGQDYQIIFRWLLSIYAFIFVFRQWKNYGAHKANAKPLEHDPVYPLRFNLPFYVYILHQQRAPLLE |
| Ga0186352_104842 | Ga0186352_1048421 | F094899 | EMMLSRGSKRGAISILSTNKRSFFDYIRVANEVDAGQSLDEIASNMTKESDTKESASFGWQWLEWFQQNAPEKYAEYASNRSQFQRWEQYLGERGVKTSKKISFEDYKKRIADASFVDDLEVNYYVERDTISSIENMQTLNSWPSSSVASFQQNCEKNGDLIVKPLTEEDKQRQKETLENAELYDEKMKLMAQEILKDFEQIDAERMMLGQETFLMELSQHPQFAEAMEDTYTAKQNYLDYAMLPIHRDYVKREKLNAIQDEERRKAFLERFEYGTKIYNGMDCSVPP |
| Ga0186352_110584 | Ga0186352_1105842 | F010522 | MSRRGFADEKGAERVETRLDGLMMTDAEVDKELSKHFDEEGSYKPPHMDSFVSMTRRDCMMNVRIPPLGIEPPPFGEDQIREITEKTTLTRDNIEWARKHWNDDSIKPDQKEHVKIAQDMLEMYKKGVSFATINLWLDYYSGADIGGKGAIYNRSWARIDS |
| Ga0186352_111531 | Ga0186352_1115311 | F073071 | MMWQYIQKRHAGGGHSVPPTPHPFLAKPDELQPVPAENVGRTGYGEIRGELRNIMGGPVEEFNDFPPEMGSLERGRWFPWSLRDDYPPMITTSAEQNRRIWSEMHMEQLLDHHPVHEVHASELPDYHYFSPINNELDHKLPKENAVTEVSQQYAKDITDVPRFFRSGVPKLPRQEQDWYVPRLADGRFDWKRNIAQNGNTASLFDRKGWDRRFHLKLNVGNPPIPHHTTGARQWAQMPIYFRVAEAPLTKRLGRHLYASQVDKHLWFVCIYFGSLLYISSKGGHWRQMVWENDPYNVDVCFVSENRKKGGFHGII |
| Ga0186352_112338 | Ga0186352_1123381 | F070865 | VHFNSSVRSSPLVETEGRYLFCTMSVPFFSDFTKRTKDFFKRDKYDLGQVVEVSTKCGDSISVKTKVSHADSVKTKFTATVKRPNGRQIEVTEDLRKGLSLKLKLPKFYRNIDIETEHTNADVELTAKYKPAADAKNAFYSTKVTGYYNPDRDGARVCKTKAEFAVGDDQLNLSVGGDITVVDKSKHDAHTGAEPKVTAYTLGFLYTPTKDSQYSIIYTPDPQSNGMEYSFTCFRKMSDKCQLAAKADGKVDTKLTGFPPVVTLAGGWTLGANYMQGFVNSRKEYGLAYKVKVSDSATLNLGLSSYLSDEQRMETRFGYKLQV |
| Ga0186352_114119 | Ga0186352_1141191 | F015960 | MMAGPALVMTSMRTAVGGTKGAPPISIDDLYGLCFLAEPSVRPPVERQPQDMFDVDQRINEVVVYVNGGLHATKDKVSEDFVRHMFEASVIFFPRDASNKPQEFRDILKAQGGTDELPQLWIKGKLVGHGQELKDFDRVWELCTPARRPWPREGSYQKGFYNRSGVTQSDQIMGTQ |
| Ga0186352_117433 | Ga0186352_1174332 | F015563 | SNQLQSASVSHTLSSSLHACMSAPKISRALASRPAFWGKWGIYNPNVAKEYLRQAYNRGYGQPLISGRENGYEATNFITYLARRWNYDWFKVIAMRIDSERTPLMVLRRQIWMARLEYWLRRFHARKAINRAAKVEWAYIKERLHQPMTWTGRDAQHFSLWLLNVIGFWCIGEAASRQKLTGYPVATPEWTPAKPKFAPGFWHLYDPFEDYPFDNQPNYITKQFQRSTWWHNSKETYWAPHRIPVAFASG |
| Ga0186352_118682 | Ga0186352_1186821 | F091322 | MAAAAAASKEFPRIISNNLLTKSAFLSYSRYLAFGFGYFYAFCKALYLQSYVETEDQKKFAQLREAEISVNTLRGVTFHGPQLWDPEYTELQMKFRDCYPDFYLHPNDEFVYQTTRGRQREQKVKEDMHSEAVAFLKEWKASEGKR |
| Ga0186352_118853 | Ga0186352_1188531 | F058691 | MFSFPPIAQRFLRSKTWWRVIRFSPGELFDGLTVKYPLVGIGVAVYGYHYFWKWPLQEAQENRFKRWRENWRAEVHYQEAIDWDTKQSRDEMREFLDAQKEKYGSLKKAMTAYERRSGKQAPPLVLGDPVYDHTMKRIGVPIKGDEEPSFLWDGTAYMKADEPPPTFADGKIRVPEAPRFYVDSN |
| Ga0186352_119315 | Ga0186352_1193151 | F070864 | LNYSLSPLASIAIMSYENALKTVNFLLEVLEEADKPAPIDSGAKATTSTAAPVSDEKEEYFTSVEDDGVKEGSTVKVTTNLKRLDEAWAEAELGSNDEKGMYLGVIGKIMEVEEDDDTVQLRWANLDTCWMPIKACIDAKGAEPTLPSGMISHLDR |
| Ga0186352_119874 | Ga0186352_1198741 | F073071 | YGEIRGELRNIMGGPVEELNDFPKDMGKLERGRWYPYSTRDEYPPFITTSAEQNSRVWTEMHMEQLLDHHPPHEVHASELPDYHYFPPIVNELDPKLPEESQVSELSLQYTADQTDVPRFFRTGVPKIPRHEQDWYVRRLSDGRFDWKRNIRENGYTASLFDHKGWDRRFLLKLNVPNPPMHTVGWRQWAQMSTYFRVAEWPLPKRLGRQLYASQFDKHVIFIAVYWGSLIWLSGNGGHWRELVWQNDPFNYDMCFASENRKKGG |
| Ga0186352_121135 | Ga0186352_1211351 | F010522 | VLVSLFIGPFKSYRAHHLITMLSRIVSRSVISSKSSLISKISIRSFAAEKGEERVEGRLDGLMLSDDEIDKELAKHFDEEGSYTPPHMDAFPSMTRRDVMMNVRIPPLGIEPPPFGEDQIREITEKTSLSRENIEWTRKHWADESLKPDQVQHQKIATDMLEMYKKGVSFATINLWLDYYSGADVGSKNAIYNRSWARIDS |
| Ga0186352_122364 | Ga0186352_1223642 | F059642 | CRRAVTASHIIQQQSLARPNNAVLLAKRNHVLDKRNYDPDIDPLFAVQQHARPWDHFALRANQNRQRRFQQYALWFSCVYLGWSVFKMVVIRPRLNKVEKWDYQAKYWRDGYWVREFPEGLVVKEYANGKVSIEPGQTSRPSLPRRALNFIFRIGDTR |
| Ga0186352_122387 | Ga0186352_1223871 | F015563 | LLHFVEQSTMSAPKISRAAAARPAFWGKWGIYNPNVAKEYMRQAYNRGYGQPLISGKEYGFGTTPFLTYLARRWHYDWLKLIAMRVDSERTPLMVLRRQIWMARFEYWVRRWYARKAINRAAKVEWAYIKERISQPMTWTGRDVQHAGLWLLNVFAFFSIGEVVSRQYLYGYPVATPEWTPSRPKFVPGFWHVYDPLENYPFENQPNYITKQFQRSGWWHNSAETYW |
| Ga0186352_125796 | Ga0186352_1257961 | F054572 | QPGPRHRGPVFITKIPPGFRLPALIFGYCFLTWNVRHWLFPYARTVHNVNLPIHSEREVQGTWHERFRKQEDIYRWGHIYAKMQEQRIQDAKRKGILPDNYPENEEQLARMDPAEFEAMMPEVTKIRFDVGVDRLDGVCALTNWPLPEGHGLEE |
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