NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017224

3300017224: Metatranscriptome of marine eukaryotic communities from North Sea grown at 20 C, 30 psu salinity and 440 ?mol photons light - Ammonia sp. (MMETSP1384)



Overview

Basic Information
IMG/M Taxon OID3300017224 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0128947 | Gp0212064 | Ga0186352
Sample NameMetatranscriptome of marine eukaryotic communities from North Sea grown at 20 C, 30 psu salinity and 440 ?mol photons light - Ammonia sp. (MMETSP1384)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size45711740
Sequencing Scaffolds15
Novel Protein Genes15
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa7
Not Available6
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomemarine water bodysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationNorth Sea
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010522Metatranscriptome302N
F015563Metagenome / Metatranscriptome253Y
F015960Metatranscriptome250N
F054572Metatranscriptome139N
F058691Metatranscriptome134Y
F059642Metatranscriptome133N
F070864Metatranscriptome122Y
F070865Metatranscriptome122Y
F073071Metatranscriptome120N
F086594Metatranscriptome110N
F091322Metagenome / Metatranscriptome107N
F094899Metatranscriptome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186352_100039All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa6534Open in IMG/M
Ga0186352_104842Not Available2077Open in IMG/M
Ga0186352_110584All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa1405Open in IMG/M
Ga0186352_111531All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa1326Open in IMG/M
Ga0186352_112338Not Available1265Open in IMG/M
Ga0186352_114119Not Available1137Open in IMG/M
Ga0186352_117433All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera929Open in IMG/M
Ga0186352_118682All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa859Open in IMG/M
Ga0186352_118853All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa851Open in IMG/M
Ga0186352_119315Not Available827Open in IMG/M
Ga0186352_119874All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa799Open in IMG/M
Ga0186352_121135All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa739Open in IMG/M
Ga0186352_122364Not Available685Open in IMG/M
Ga0186352_122387All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera685Open in IMG/M
Ga0186352_125796Not Available552Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186352_100039Ga0186352_1000392F086594MAAKRSILQFVSKRYFQPRATKTPFPPPHPIKTKFDMSHTEPIKNYELAVSDSGDNWEKHNALYEHYQRGEYFVTHSIPDFEKAYGGYYGAHWPAHFGGGYHKFLRRRMDQPGQYNAKYPWQNFLRRKCDERGVHWDFPRGQDYQIIFRWLLSIYAFIFVFRQWKNYGAHKANAKPLEHDPVYPLRFNLPFYVYILHQQRAPLLE
Ga0186352_104842Ga0186352_1048421F094899EMMLSRGSKRGAISILSTNKRSFFDYIRVANEVDAGQSLDEIASNMTKESDTKESASFGWQWLEWFQQNAPEKYAEYASNRSQFQRWEQYLGERGVKTSKKISFEDYKKRIADASFVDDLEVNYYVERDTISSIENMQTLNSWPSSSVASFQQNCEKNGDLIVKPLTEEDKQRQKETLENAELYDEKMKLMAQEILKDFEQIDAERMMLGQETFLMELSQHPQFAEAMEDTYTAKQNYLDYAMLPIHRDYVKREKLNAIQDEERRKAFLERFEYGTKIYNGMDCSVPP
Ga0186352_110584Ga0186352_1105842F010522MSRRGFADEKGAERVETRLDGLMMTDAEVDKELSKHFDEEGSYKPPHMDSFVSMTRRDCMMNVRIPPLGIEPPPFGEDQIREITEKTTLTRDNIEWARKHWNDDSIKPDQKEHVKIAQDMLEMYKKGVSFATINLWLDYYSGADIGGKGAIYNRSWARIDS
Ga0186352_111531Ga0186352_1115311F073071MMWQYIQKRHAGGGHSVPPTPHPFLAKPDELQPVPAENVGRTGYGEIRGELRNIMGGPVEEFNDFPPEMGSLERGRWFPWSLRDDYPPMITTSAEQNRRIWSEMHMEQLLDHHPVHEVHASELPDYHYFSPINNELDHKLPKENAVTEVSQQYAKDITDVPRFFRSGVPKLPRQEQDWYVPRLADGRFDWKRNIAQNGNTASLFDRKGWDRRFHLKLNVGNPPIPHHTTGARQWAQMPIYFRVAEAPLTKRLGRHLYASQVDKHLWFVCIYFGSLLYISSKGGHWRQMVWENDPYNVDVCFVSENRKKGGFHGII
Ga0186352_112338Ga0186352_1123381F070865VHFNSSVRSSPLVETEGRYLFCTMSVPFFSDFTKRTKDFFKRDKYDLGQVVEVSTKCGDSISVKTKVSHADSVKTKFTATVKRPNGRQIEVTEDLRKGLSLKLKLPKFYRNIDIETEHTNADVELTAKYKPAADAKNAFYSTKVTGYYNPDRDGARVCKTKAEFAVGDDQLNLSVGGDITVVDKSKHDAHTGAEPKVTAYTLGFLYTPTKDSQYSIIYTPDPQSNGMEYSFTCFRKMSDKCQLAAKADGKVDTKLTGFPPVVTLAGGWTLGANYMQGFVNSRKEYGLAYKVKVSDSATLNLGLSSYLSDEQRMETRFGYKLQV
Ga0186352_114119Ga0186352_1141191F015960MMAGPALVMTSMRTAVGGTKGAPPISIDDLYGLCFLAEPSVRPPVERQPQDMFDVDQRINEVVVYVNGGLHATKDKVSEDFVRHMFEASVIFFPRDASNKPQEFRDILKAQGGTDELPQLWIKGKLVGHGQELKDFDRVWELCTPARRPWPREGSYQKGFYNRSGVTQSDQIMGTQ
Ga0186352_117433Ga0186352_1174332F015563SNQLQSASVSHTLSSSLHACMSAPKISRALASRPAFWGKWGIYNPNVAKEYLRQAYNRGYGQPLISGRENGYEATNFITYLARRWNYDWFKVIAMRIDSERTPLMVLRRQIWMARLEYWLRRFHARKAINRAAKVEWAYIKERLHQPMTWTGRDAQHFSLWLLNVIGFWCIGEAASRQKLTGYPVATPEWTPAKPKFAPGFWHLYDPFEDYPFDNQPNYITKQFQRSTWWHNSKETYWAPHRIPVAFASG
Ga0186352_118682Ga0186352_1186821F091322MAAAAAASKEFPRIISNNLLTKSAFLSYSRYLAFGFGYFYAFCKALYLQSYVETEDQKKFAQLREAEISVNTLRGVTFHGPQLWDPEYTELQMKFRDCYPDFYLHPNDEFVYQTTRGRQREQKVKEDMHSEAVAFLKEWKASEGKR
Ga0186352_118853Ga0186352_1188531F058691MFSFPPIAQRFLRSKTWWRVIRFSPGELFDGLTVKYPLVGIGVAVYGYHYFWKWPLQEAQENRFKRWRENWRAEVHYQEAIDWDTKQSRDEMREFLDAQKEKYGSLKKAMTAYERRSGKQAPPLVLGDPVYDHTMKRIGVPIKGDEEPSFLWDGTAYMKADEPPPTFADGKIRVPEAPRFYVDSN
Ga0186352_119315Ga0186352_1193151F070864LNYSLSPLASIAIMSYENALKTVNFLLEVLEEADKPAPIDSGAKATTSTAAPVSDEKEEYFTSVEDDGVKEGSTVKVTTNLKRLDEAWAEAELGSNDEKGMYLGVIGKIMEVEEDDDTVQLRWANLDTCWMPIKACIDAKGAEPTLPSGMISHLDR
Ga0186352_119874Ga0186352_1198741F073071YGEIRGELRNIMGGPVEELNDFPKDMGKLERGRWYPYSTRDEYPPFITTSAEQNSRVWTEMHMEQLLDHHPPHEVHASELPDYHYFPPIVNELDPKLPEESQVSELSLQYTADQTDVPRFFRTGVPKIPRHEQDWYVRRLSDGRFDWKRNIRENGYTASLFDHKGWDRRFLLKLNVPNPPMHTVGWRQWAQMSTYFRVAEWPLPKRLGRQLYASQFDKHVIFIAVYWGSLIWLSGNGGHWRELVWQNDPFNYDMCFASENRKKGG
Ga0186352_121135Ga0186352_1211351F010522VLVSLFIGPFKSYRAHHLITMLSRIVSRSVISSKSSLISKISIRSFAAEKGEERVEGRLDGLMLSDDEIDKELAKHFDEEGSYTPPHMDAFPSMTRRDVMMNVRIPPLGIEPPPFGEDQIREITEKTSLSRENIEWTRKHWADESLKPDQVQHQKIATDMLEMYKKGVSFATINLWLDYYSGADVGSKNAIYNRSWARIDS
Ga0186352_122364Ga0186352_1223642F059642CRRAVTASHIIQQQSLARPNNAVLLAKRNHVLDKRNYDPDIDPLFAVQQHARPWDHFALRANQNRQRRFQQYALWFSCVYLGWSVFKMVVIRPRLNKVEKWDYQAKYWRDGYWVREFPEGLVVKEYANGKVSIEPGQTSRPSLPRRALNFIFRIGDTR
Ga0186352_122387Ga0186352_1223871F015563LLHFVEQSTMSAPKISRAAAARPAFWGKWGIYNPNVAKEYMRQAYNRGYGQPLISGKEYGFGTTPFLTYLARRWHYDWLKLIAMRVDSERTPLMVLRRQIWMARFEYWVRRWYARKAINRAAKVEWAYIKERISQPMTWTGRDVQHAGLWLLNVFAFFSIGEVVSRQYLYGYPVATPEWTPSRPKFVPGFWHVYDPLENYPFENQPNYITKQFQRSGWWHNSAETYW
Ga0186352_125796Ga0186352_1257961F054572QPGPRHRGPVFITKIPPGFRLPALIFGYCFLTWNVRHWLFPYARTVHNVNLPIHSEREVQGTWHERFRKQEDIYRWGHIYAKMQEQRIQDAKRKGILPDNYPENEEQLARMDPAEFEAMMPEVTKIRFDVGVDRLDGVCALTNWPLPEGHGLEE

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