3300017210: Metatranscriptome of marine eukaryotic communities from northern Puget Sound, Washington in Ciliate medium, 15 C, 30 psu salinity and 103 ?mol photons light - Favella ehrenbergii Fehren 1 (MMETSP0123)

Overview

Basic Information

• IMG/M Taxon OID: 3300017210
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212051 | Ga0186339
• Sample Name: Metatranscriptome of marine eukaryotic communities from northern Puget Sound, Washington in Ciliate medium, 15 C, 30 psu salinity and 103 ?mol photons light - Favella ehrenbergii Fehren 1 (MMETSP0123)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 27996183
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	6
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Tintinnida → Xystonellidae → Favella → Favella ehrenbergii	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: northern Puget Sound, Washington
• Coordinates
  • Lat. (^o): 48.634
  • Long. (^o): -122.868
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018935	Metagenome / Metatranscriptome	232	Y
F019022	Metagenome / Metatranscriptome	232	Y
F026284	Metagenome / Metatranscriptome	198	Y
F033446	Metagenome / Metatranscriptome	177	Y
F039667	Metagenome / Metatranscriptome	163	Y
F047709	Metagenome / Metatranscriptome	149	Y
F051179	Metagenome / Metatranscriptome	144	Y
F062794	Metagenome / Metatranscriptome	130	Y
F067781	Metagenome / Metatranscriptome	125	Y
F083237	Metagenome / Metatranscriptome	113	Y
F096063	Metagenome / Metatranscriptome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186339_104426	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1790
Ga0186339_107111	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1352
Ga0186339_108919	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1137
Ga0186339_110731	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	958
Ga0186339_113755	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Tintinnida → Xystonellidae → Favella → Favella ehrenbergii	718
Ga0186339_114103	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	692
Ga0186339_114247	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	682
Ga0186339_114787	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia	642
Ga0186339_115233	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	610
Ga0186339_115464	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	595

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186339_104426	Ga0186339_1044265	F083237	MVEAFVSTKFFLSVASKMNYDDGIVFTENNIVAYLAELEEYIGSLITYMAFKRDDPNAATSAIPLAQLNEKKFGQRDLEIDLNSIPAKPQREDPVLE
Ga0186339_105697	Ga0186339_1056972	F067781	MFVPLRNAKSQKADFDCVAKIMAIHEMDAYTNELKLRDASGTTFYTLALRLKFPHLKAGQAVRVRSATWDETSTQKSVLSLQHYSNIMTFIGSSKLAGAVARVQDDSAADRAELAKDVPSVAVTISEIDRKYANLPSTSLEELFGGKATADTYRTSFCVTRVEPADIRDAVKVYDRKAKKVSTAKGTKGGELVWNVQLSVKDASTLSNANQYRILNYSHEGLGAAFLGKPSNLWTDAAAAKRVEKSVANLTKFNVWVDAVVERRNGWYYIKDTKLRQ
Ga0186339_107111	Ga0186339_1071111	F039667	MAFYGVNQDVMVRELNLRFKLAIQQKGGVGLRTLKVIFRRMDFNGNRKLDTSEFEQALAAFG
Ga0186339_108919	Ga0186339_1089191	F033446	MSAINFYSSIFPEYYWQKPQHDLGNRVVHSSLYKTMNPIRSRYDYAPNEYSQMPFYLGSVPQLNWLYGSLDYSFQKYHKQYQAHDDWVPDRKAKTLGTRQGGHCNPVMKNSKFMTLVPNMIPRGCYREIRKFQSCQTASGKDSPSCQSQKLNIMEICPDHILEGLREKKKWFARAEVIDNETYRRAMQVSDYNRGRSVSDLKLKTWEYGSTIRSDSFYEDDRWNPTKFSHPHRNDNVNFPDQEYKDFFGGTIGTAKQKEMERYKMDVFTDQSEAIREHHSQRRMKLSDIAKDVDALNADNKPASQ
Ga0186339_110731	Ga0186339_1107311	F026284	IVKMSEVASRIPVERATGKYKRDWHSTQAEQDAYDDRMRRAMNPQISDYVQNGELICFGVSEHTLEERQFEWTPKALHDLNVLKSWFPKRDLSMITRPAYQSDFNWTNYASRAQLRVALGLLFIRELPIKNFYVRCWLAYGWICWFIVRGVGRGLRHNRPIVLYNHAFNAKALVNYPDLFHWTISRVLPKNPPVPDAHREWRTRQTPVYHQYHKNVYRYRYRRPRYVQWDGSMNQPVMPFLHDQGTDVNNGTFKRNVNTSPQLK
Ga0186339_113755	Ga0186339_1137551	F019022	KIKARMVFHITNYMRETNVWMIRKMRWILWGTFSFIPIYRNVYWDFLGRRVAWKDSLRGETEAEKEAAAVADRADWGYTPRYEGKYDFSIKTKKQAEQTRE
Ga0186339_114103	Ga0186339_1141031	F051179	MIFFYTNFDKCRREIINYEEKRATPSMNKRHPKESKPEALALLRCHAQNLQFEPVCNDPFNDARECLFKMDGQMRVCEPELNLFEECVHDPKSFARFQAMATPIQREARDYFSTIHRKNYFF
Ga0186339_114247	Ga0186339_1142472	F062794	MDFFYKPPVQRPDECAALEENYINCLMQKALKDRVMNNKCVLDSILWFHLECPKAAAKFDDPDIFKMKFRDFFAHQKLDAQILY
Ga0186339_114787	Ga0186339_1147871	F047709	MKSFAFAGLTALALADKGSFPRDDSFHADCHVSAQFDGVSCDSLYALMDAEIRSWNSDTTSPAQGVYNLKEESVDDYIWSTRLTKNQKYTDDQLFEFSSNDTGCAVTGRSRSQSMSYYDYSVNFCNLWNVYNGLNLTSYSVGKCGYPAKDPASTCAKY
Ga0186339_115233	Ga0186339_1152331	F096063	MQGDLYSGRYSNDEIRRILEINARPTFLQKPEAAFYKKNALENGPTWAEKREFVHWLINDSNISASSKLYLRENQYWIEKYQLRGLKYGLIASSATFLFFPVIRRQPFVRRFSISMLPMAYFLNWGYVWGHENWWRRQKEVVVTYEIFTGNRHRTTMK
Ga0186339_115464	Ga0186339_1154641	F018935	LIMSSPQGSGRNTYSYYDYTKSYNSRFLNKYQSHTHWWAGRASGFIELLRLKSVRLKSNRNWMWFDVRYGTKFLYIFYMPQLVYLTASYAITPIWRRLDERYHLRFADGEFDDIDEVEPFVTYQQRKKPYTRRKYADAVKLVYEGKEEYDYAQEQPQRYR