x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our
privacy policy .
OK
Sample 3300017151
3300017151: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 14 C, 36 psu salinity and 165 ?mol photons light - Skeletonema dohrnii SkelB (MMETSP0562)
Overview
Basic Information
IMG/M Taxon OID 3300017151 Open in IMG/M GOLD Reference Gs0128947 | Gp0212256 | Ga0186544 Sample Name Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 14 C, 36 psu salinity and 165 ?mol photons light - Skeletonema dohrnii SkelB (MMETSP0562) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 25474838 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 2
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema 3 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Atlantic Ocean Coordinates Lat. (o ) 41.57361 Long. (o ) -71.40861 Alt. (m) N/A Depth (m) .5 Location on Map
Zoom: - Reset +
Powered by OpenStreetMap ©
Associated Families
Family Category Number of Sequences 3D Structure?
F034938 Metagenome / Metatranscriptome 173 Y F051162 Metagenome / Metatranscriptome 144 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186544_108311 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema 1133 Open in IMG/M Ga0186544_108728 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema 1092 Open in IMG/M Ga0186544_111456 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema 856 Open in IMG/M Ga0186544_116030 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta 528 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186544_108311 Ga0186544_1083111 F034938 LHGTFHHNPKVYNRNSNMMNAPFPNAQRMHYESAASSSTGGGHRTMINEAIILPKISADDQLAQRDDEEESTNASATNMVLWRGNLVAEKEAMALRHVFDDMQDHFGHQRADPRVRFNANLVRPSRDGMWFGDLDFTYNINGEHCNLGYLGMDVCVDLCPKLVHKHGQLRLKNYGKSWVYVYLPQLTLDKFKSYVKTGTGWDVSNEGTVYDPNRNLVAIEAMLHHQTGQPKPSFWAVKDKDAHGDNMSFSRIGTVQEVNEHPHQQRVHRGVGIFSVSMEVEGSPNFKPTPRAGDEANLCFTLVSVRTWGVTDCVAPIVHAPNKWY Ga0186544_108728 Ga0186544_1087281 F034938 DIAHNIRNGHCLSIPQPPINIMMMHYTTNNTTDGSSERLSLYPAYSKTAPQPPAHVIRNIADHNNQMAAASRDDEETVADAANTLAEWRGNTVPEKEAKALRHVFDDLQDHFGYQRVDPRVRFNSTNLARLGNGGTWFGDLDFTYDIKGDHCNLAYIGMDVCVDLTPKLVHKHGQPMLKDYGKTWVYVYLRQLTLDKVKSYVKTGTGWDVSDDGTVFDPNRNLVALEAKMSNQTGQPKPSVWVAKDKNASEQDMSFSRIGTVQDVSSHPSQQRIHRGVGIFSVSMEVEGGPNVRPTPGMGCEANLCFTLVSLRTWGITDCVAPIVHAPSKWY Ga0186544_111456 Ga0186544_1114561 F034938 NADDKDMVKWRGNLVPREEAKALRHVFDELKDHFGHQQPDPHVRVNVASFKHPGHGLMWHGNLDFTYQIEGEHCNLGYIGMDVCIDLIPKKCQKQGEPTLKDYGKTWVYVYTPQETLDKFIKYVKTGTGWGVSTDGTVHDPNRNLVAIEARLHHQTDQPKPSFWVAKNRDASIGDMSFSRMGSIQEVNETSAQQRVHRGIGIFSVSLEVEGTPNFEPTPGTRDDANLCFTLVSVRTWGITDCVAPIVHAPSKWF Ga0186544_116030 Ga0186544_1160302 F051162 MPLVKVFAQVGMTKPIPLASLQSKLCAIWSTKPETTKLILSRVEDWTSDSFDEDCYIDIRAYGKAERTREFVLDGMTQVQKAFAEENLVANVRLETYEGERYFHVPPPKAST
