3300017147: Metatranscriptome of marine eukaryotic communities from English Channel in K medium with silica, 15 C, 21 psu salinity and 310 ?mol photons light - Skeletonema costatum 1716 (MMETSP0013_2)

Overview

Basic Information

• IMG/M Taxon OID: 3300017147
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212169 | Ga0186457
• Sample Name: Metatranscriptome of marine eukaryotic communities from English Channel in K medium with silica, 15 C, 21 psu salinity and 310 ?mol photons light - Skeletonema costatum 1716 (MMETSP0013_2)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 35415182
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	8
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: English Channel
• Coordinates
  • Lat. (^o): 48.45
  • Long. (^o): 3.57
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034938	Metagenome / Metatranscriptome	173	Y
F051162	Metagenome / Metatranscriptome	144	Y
F067805	Metagenome / Metatranscriptome	125	Y
F099352	Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186457_111453	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1173
Ga0186457_112016	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1122
Ga0186457_112170	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1104
Ga0186457_112260	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1094
Ga0186457_112625	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1059
Ga0186457_113329	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	995
Ga0186457_114085	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	929
Ga0186457_114217	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	918
Ga0186457_117556	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	622
Ga0186457_118354	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	553
Ga0186457_118376	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	551
Ga0186457_118732	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186457_111453	Ga0186457_1114531	F034938	HGGRCYLLHPRDIPLPFPFHNPKVTETATMMNAPFPNAQRMHYEGAASSSTGGGGHRTMINEAIILPKISADDQVAQRDDEESNANATNMVLWRGNLVAEKEAMALRHVFDDMQDHFGHQRADPRVRFNANLVRPSRDGMWFGDLDFTYNINGEHCNLGYIGMDVCVDLCPKLVHKHGQLRLKNYGKSWVYVYLPQLTLDKFKSYVKTGTGWDVSNEGTVYDPNRNLVAIEAMLHHQTGQPKPSFWAVKDKDAPGDNMSFSRIGTVQEVNEHPHQQRVHRGVGIFSVSMEVEGSPNFKPTPRAGDEANLCFTLVSVRTWGVTDCVAPIVHAPNKWY
Ga0186457_112016	Ga0186457_1120161	F034938	MMMHYKKNTYGAEVSYTTYPKMTAAPQPNVIRNNAADHNDLVASRDDEETVAAAATTMTQWRGNTVPEKEAKALRHVFDDLQDHFGYQRVDPRVRFNNTNLARLGNGGTWFGDLDFTYDIKGDHCNLAYIGMDVCVDLAPKLVHKHGQPMLKNYGKSWVYVYLPQLTFDKFKSYVKFGTGWDVSDEGTVFDPNRDTVAIEAKMHHESGQPKPSFWAAKEKEASAGDMSFSRIGTVQDVSSHPSQQRIHRGVGIFSVSMEIEGTANFKPSPRMGDEANLCFNLVSFRTWGTTDGVAPIVHAPRKWY
Ga0186457_112170	Ga0186457_1121701	F034938	PLLTKRDWSSVILHCRCHLGCICGTLHWEAFIVISSHNWLTGTMANEAPANVIPIPNDEESVASNADKDMVKWRGNLVPREEAKALRHVFDDLKDHFGHQQPDPHVRANVTSFKHPGHGLMWHGNLDFTYQIEGEHCNLGYIGMDVCIDLIPKKCQKQGEPTLKDYGKTWVYVYTPQETLDKFIKYVKIGTGWGVSTDGTVHDPNRNLVAIEARLHHQTDQPKPSFWVAKNRDASIGDMSFSRIGSVQEVNETSAQQRVHRGIGIFSVSLEVEGTPNFKPTPGTRDDANLCFTLVSVRTWGITDCVAPIVHAPSKWF
Ga0186457_112260	Ga0186457_1122601	F034938	IAHNIRNGHCLSIPQPPINIMMMHYTTNNTTDGSSERLSLYPAYSKTALQPPAHVIRNIADHNNQMAAASRDDEETVADAANTLAEWRGNTVPEKEAKALRHVFDDLQDHFGYQRVDPRVRFNNTNLARLGNGGTWFGDLDFTYDIKGDHCNLAYIGMDVCVDLTPKLVHKHGQPMLRDYGKSWVYVYLRQLTLDKVKSYVKTGTGWDVSDDGTVFDPNRNLVAIEAKMHHQTGQPKPSVWVAKDKNASEQDMSFSRIGTVQDVSSHPSQQRIHRGVGIFSVSMEVEGGPNVRPTPGMGCEANLCFTLVSLRTWGITDCVAPIVHAPSKWY
Ga0186457_112625	Ga0186457_1126251	F034938	MHKMAANEANVNQNIAAQNEQAGQIDVDEDPNMVQWRGNLVTEKEAKALRHVFDNLQDHFGHQRSDPRVMFNHVSLAHPGHGQKWHGDVDFTYDIDGDHCKLNYIGMDVCIDLAPKLVHKHGQPLLNDYGSTWLYVYLPQLSIDRVKSYMKAGTGWDVSGEGFIDDNNRSMVAIEVKLCNESGQPEPSFWVVKDKDASGGRGSMSFSRIGSVQEVAAQPHQQRIHRGIGIFSISMEVDGTSNLEPTPGTWDEANLSFTLVSARTWGVTDCVAPIVYAPSKRHLD
Ga0186457_113329	Ga0186457_1133291	F034938	PEHTLPALLVSQTSSQHHQTTSITQSETNYASGHWQKKSMGSEAANVIPNIADQRGDHDEEETMVTWRGNLVAEKEAKALRHVFDDLQDHFGLQQPDPHVKFNARLAHPGQGHFWHSDLDFTYNIKGEHCKLAYIGMDMCLDLTPKKIHKYGRPMLNDYGETWVYAYLPDMTMDKIKSYVKAGTGWDVSAAGTVVDPNRNLVAIKAKLNNQAEQPKPSFWVVTEKDSAQDDVSFSRIGSVQDVHSDTSQKRIHRGVGIFSVSMEVDGTPNFKPSSHSGEVANLVFTLVSVRTWGITDCIAPIVHAPMM
Ga0186457_114085	Ga0186457_1140851	F034938	MHKMAANEANVNQNIAAQNEQAGQIDVDEDPNMVQWRGNLVTEKEAKALRHVFDNLQDHFGHQRSDPRVMFNHVSLAHPGHGQKWHGDVDFTYDIDGDHCKLNYIGMDVCIDLAPKLVHKHGQPLLNDYGSTWLYVYLPQLSIDKVKSYVKAGTGWDVSDEGFLKDPNRNLVAIEAHLNHQSGQPEPSFWVTKDKDASGGGISFSRIGSVQEVSAQPHQQRIHRGVGIFTVSIEVEGTPNFEPTPGVGNEAKLSFTLVSVRTWGITDCVAPIVYAPSKWHHRY
Ga0186457_114217	Ga0186457_1142171	F034938	MAPGDEHDEEQPPTRMVVWRGNSVPEKEAKALRHVFDNLQDHFGHQRPDPRIRFSANLTYPGHGPMWVGDLDFMYDINGDHCSLAYFGMDVCVDLTSKLIHKHGQPMMKDYGKTWLYVYLPQLTLDKVISYVKAGTGYDVSTEGTVYDPNRNLVAIKAKLHHESEQPKPSFWVVKDKDASGGDICFSRMGSVQEVNALPHQQHVHRGVGIFSVTMEVEGTPNFQPTPREGEEANLSFTLVSVRTWGITDCVAPIVHSPPDKWS
Ga0186457_117556	Ga0186457_1175561	F099352	MVFNGSEAFKGASAPSLEREVSVTSNNNRVLLDSQELNAASGAFNLCCGEAYARFSELKRLKVHPGNMTKERDAVESCSANVYNGIKASCVEQFDAVKSCLSDNPDVWAKCASMRRELEVCTVKNNLGELKKLSS
Ga0186457_118354	Ga0186457_1183541	F051162	MPLVKVFARVGMTKPIPLASLQSKLCAIWSTKPETTKLILSRVEDWTSDSFDEDCYIDIRAYGKAERTREFVLDGMTQVQKAFAEENLVANVRLETYEGERYFHVPPPKASK
Ga0186457_118376	Ga0186457_1183761	F051162	LACIHRHPLDQVHPTMPLVKVFARVGMTKPIPLASLQSKLCAIWSTKPETTKLILSRVEDWTSDSFDEDCYIDIRAYGKAERTREFVLDGMTQVQKAFAEENLVANVRLETYEGERYFHVPPPKAST
Ga0186457_118732	Ga0186457_1187321	F067805	MARKQEKDEEITLSKKDQKKVDKLTAQIPYHEGRGNKEEVEKIKAQVDAIWVKTKEAAFA