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Sample 3300017146
3300017146: Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater with alpha-glycerophosphate, at 20 C, 35 psu salinity and 752 ?mol photons light - Emiliania huxleyi CCMP 370 (MMETSP1157)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300017146 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0211921 | Ga0186209 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from unknown location in Aquil nutrients amended seawater with alpha-glycerophosphate, at 20 C, 35 psu salinity and 752 ?mol photons light - Emiliania huxleyi CCMP 370 (MMETSP1157) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 37510362 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi | 2 |
| All Organisms → cellular organisms → Eukaryota | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Location Information |
| Location | |
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F021038 | Metagenome / Metatranscriptome | 220 | Y |
| F034449 | Metagenome / Metatranscriptome | 174 | N |
| F049399 | Metagenome / Metatranscriptome | 146 | Y |
Associated Scaffolds
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| Ga0186209_102611 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi | 2101 | Open in IMG/M |
| Ga0186209_113040 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi | 1045 | Open in IMG/M |
| Ga0186209_117130 | All Organisms → cellular organisms → Eukaryota | 850 | Open in IMG/M |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0186209_102611 | Ga0186209_1026112 | F034449 | VQRSVLSTHASLSCATNSFLRSSTAALKVEKPVVKPVLKLRGGVSAGDVITGGALFLSASVGLPALAGGSDALFMINYPGFDWAGYQAKWTAESKSYLDTMTRFFGGALLLAGALQYYAKDVMAAKPYYAILTVTQLVFAGLQIFFAAPTAAMPSVHYVYAGMNAVLAVAGAMAMI |
| Ga0186209_113040 | Ga0186209_1130401 | F049399 | MSEIPAEFADFVQAKQRQLALNVLTSSAAGVVLANLAALVAGDASLDLFAEIVQTQLPLIALTGAAEMARPPWAK |
| Ga0186209_117130 | Ga0186209_1171301 | F021038 | RPEEGSSVPAERGEEDTLERNGGACIQPCRSSTLTSPRSSSMRMMSIQNFGFFVMYFAIWLATPAADVCAESRFAEGFMALTCFLVSFLCIGMGFGGYVDDGFTFPFYWIAHAVPAVGGYTTCTFLIPMARFSETGEACATLAPVVGSAVQAVYIVHAGLYWCYVCNMVSVTYFSFLKPTFGLKFKASICVALLALIEAIVFGAMAQYGVFAASPLPSASKKLFGMF |
