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Sample 3300017114
3300017114: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium, 13 C, 21 psu salinity and 436 ?mol photons light - Amphiprora paludosa CCMP 125 (MMETSP1065)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300017114 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0212241 | Ga0186529 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium, 13 C, 21 psu salinity and 436 ?mol photons light - Amphiprora paludosa CCMP 125 (MMETSP1065) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 37951714 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Amphipleuraceae → Amphiprora → Amphiprora paludosa | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Location Information |
| Location | Atlantic Ocean |
| Coordinates | Lat. (o) | 41.525 | Long. (o) | -70.6736 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F001506 | Metagenome / Metatranscriptome | 681 | Y |
| F051162 | Metagenome / Metatranscriptome | 144 | Y |
| F081743 | Metagenome / Metatranscriptome | 114 | Y |
Associated Scaffolds
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|
| Ga0186529_100009 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 12263 | Open in IMG/M |
| Ga0186529_105167 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Amphipleuraceae → Amphiprora → Amphiprora paludosa | 2106 | Open in IMG/M |
| Ga0186529_113093 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 1031 | Open in IMG/M |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0186529_100009 | Ga0186529_10000919 | F001506 | MNQIHYQNRCRCNEEFSIAKKRKSVTRSEGKPIQYPDTKSDEILSKTFQIKYEKKLSLIAKLVLNSFQNKYIYYAIDDILYLFELNQTERENLLAILYSPILSLQNNYSVNFFDIWVKEIYIDEVFKVNKFLSTDSQTSKQFSYITIKLVYKTRVPLKKQEPLW |
| Ga0186529_105167 | Ga0186529_1051672 | F051162 | LDDTPRKARQLFPTLHLTVSTNIMPLVKLFARSNLKKTVPLPRLQEKLCGIWGTKPSTTKLMLFRCEDWTDESFQEDVYVDIRAYGKAERTREFVLDGMKDIQKAFAEEDLIANVRLETYEGERYFHVPPTSDAK |
| Ga0186529_113093 | Ga0186529_1130932 | F081743 | WLDVDHEEFGIMAEIGRIVKVGFVKDVPGLAFHKRFKGSNHPFYESVYAKASKVNQFMADNMDTCIIK |
