3300017100: Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, at 5 C, 35 psu salinity and 561 ?mol photons light - Thalassiosira antarctica CCMP 982 (MMETSP0905)

Overview

Basic Information

• IMG/M Taxon OID: 3300017100
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211874 | Ga0186162
• Sample Name: Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, at 5 C, 35 psu salinity and 561 ?mol photons light - Thalassiosira antarctica CCMP 982 (MMETSP0905)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 35798343
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051162	Metagenome / Metatranscriptome	144	Y
F067805	Metagenome / Metatranscriptome	125	Y
F099352	Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186162_118352	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	718
Ga0186162_119667	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	633
Ga0186162_120090	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	608

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186162_118352	Ga0186162_1183521	F099352	MVLSPFSGGEAFKGAGAPSLKTEVSVSSNSNRVILDSQELNAASGAFNLCCGEAYARFTELKRIKIHPGNMTKERDAVESCSANVYNGIQSSCAEQFDAVKSCVSDNPREWAKCASARRELEVCSVRNNLGELKKA
Ga0186162_119667	Ga0186162_1196671	F067805	MGRKIQKEEELTLSKKEQKKVDKLTAQIPYHEGRSNKEEVTKIKGQIDSIWAKAKEAQFA
Ga0186162_120090	Ga0186162_1200901	F051162	MPLVKIFARVGMNKAIPLTSLQSKLCKIWSTKPETTKLILSRVEDWTSDSYDEDCYIDIRAYGKSERTREFVLDGMTQVQQAFAEHDLAANVRLETYDGERYFHVPPKK