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Sample 3300017087
3300017087: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater w/o silicate, 18 C, 20 psu salinity and 133 ?mol photons light - Emiliania huxleyi 379 (MMETSP0996)
Overview
Basic Information
IMG/M Taxon OID 3300017087 Open in IMG/M GOLD Reference Gs0128947 | Gp0212263 | Ga0186551 Sample Name Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater w/o silicate, 18 C, 20 psu salinity and 133 ?mol photons light - Emiliania huxleyi 379 (MMETSP0996) Sequencing Status Permanent Draft Sequencing Center National Center for Genome Resources Published? N Use Policy Open
Dataset Contents
Total Genome Size 23056954 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi 2 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia delicatissima 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Location Information
Location Atlantic Ocean Coordinates Lat. (o ) 50.1669 Long. (o ) -4.2504 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F015173 Metatranscriptome 256 Y F034449 Metagenome / Metatranscriptome 174 N F049399 Metagenome / Metatranscriptome 146 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0186551_106350 All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi 1123 Open in IMG/M Ga0186551_108889 All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia delicatissima 896 Open in IMG/M Ga0186551_111180 All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi 740 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0186551_106350 Ga0186551_1063502 F049399 MSETPAEFADFVQAKQRQLALNVLTSSAAGVVLANLAALVAGDASLDLFAEIVQTQLPLIALTGAAAVLSGTEMARPPWAK Ga0186551_108889 Ga0186551_1088891 F015173 LNDTAALNSTGVAEDQVTLVGLFNQLLALLFPIWPWEPFIVMPFALEILRAKRKTGLSVGFVTIFAAVFCLAHGVGFVQAIDTVFYGGSGICACALPGAPDDIDTKAMCNMMAIHIFLMLLMGVFFARIALSPSRRVPVGGLEAVYCSRAALFFVVGGVSQGIPYWAVTFQYPERFEEFMRADGFYSARGVTPGAVEFVSPLVWIVYGLYSYGELMSLVDSAGNTANDKASVGGALPPMV Ga0186551_111180 Ga0186551_1111801 F034449 ADRVYMPTLKLAALALLASSTAALKVEKPVVKPVLKLRGGVSAGDVITGGALFLSASVGLPALAGGSDALFMINYPGFDWAGYQAKWTAESKSYLDTMTRFFGGALLLAGALQYYAKDVMAAKPYYAILTVTQLVFAGLQIFFAAPTAAMPSVHYVYAGMNAVLAVAGAMAMI
