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Sample 3300017024
3300017024: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in NEPC medium, resuspended w/o silicate, 20 C and 216 ?mol photons light - Asterionellopsis glacialis CCMP 134 (MMETSP0706)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300017024 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0211975 | Ga0186263 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from Pacific Ocean in NEPC medium, resuspended w/o silicate, 20 C and 216 ?mol photons light - Asterionellopsis glacialis CCMP 134 (MMETSP0706) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 16775613 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Eukaryota → Sar | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 2 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Location Information |
| Location | Pacific Ocean |
| Coordinates | Lat. (o) | 32.655 | Long. (o) | -117.14 | Alt. (m) | N/A | Depth (m) | 0 |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F015298 | Metagenome / Metatranscriptome | 255 | Y |
| F021307 | Metagenome / Metatranscriptome | 219 | Y |
| F078213 | Metagenome / Metatranscriptome | 116 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0186263_101339 | Ga0186263_1013394 | F021307 | MNRILYDSRCRCKEEFSITKKRKPSGRSEGKPLQYPNEIMSKTFQIKYEKKLSLVARFILTSFRNKYLYYAIDDILYLLKANPIERENLLSILYSPVLSLQNNFCINFFDIWIYE |
| Ga0186263_112026 | Ga0186263_1120261 | F078213 | SLCFGDEGGAVGDSIGLEKGFSTMWNPPAVDAMMSRNDQESLTELGNAYKNAADNIGFQKLAPKKIADTLRQGGTFVFRGGNTKFQHFDSKVGDNAEIDAILAAI |
| Ga0186263_112801 | Ga0186263_1128011 | F015298 | MNAILEYLIAHKDWLLLVCFSVDAVNTLISFPLIMWKGPKWLLQSTDPDAKEKVEDAKVVVDLTDTDRKSFEVLWEIFGICYEGYFGFTISTLICLFKVPETRPIFAYSLFALYLYKAKAFLRTTIKTDNPQGKGKFMSILFFYWPCYGGYCLLHSIE |
