Sample 3300016859

Overview

Basic Information
IMG/M Taxon OID	3300016859 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0212357 \| Ga0186645
Sample Name	Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, f/200 phosphorous, 18 C, 18 psu salinity and 626 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0007)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	15880498
Sequencing Scaffolds	10
Novel Protein Genes	13
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: Lake Texoma, Oklahoma
Coordinates	Lat. (^o)	33.98	Long. (^o)	-96.67	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F010978	Metagenome / Metatranscriptome	296	Y
F012191	Metagenome / Metatranscriptome	282	Y
F015559	Metagenome / Metatranscriptome	253	Y
F017834	Metatranscriptome	238	Y
F019484	Metagenome / Metatranscriptome	229	Y
F043734	Metagenome / Metatranscriptome	155	Y
F056250	Metagenome / Metatranscriptome	137	N
F057823	Metatranscriptome	135	N
F067275	Metatranscriptome	125	N
F071920	Metagenome / Metatranscriptome	121	Y
F080844	Metagenome / Metatranscriptome	114	N
F094737	Metatranscriptome	105	N

Family

Category

Number of Sequences

3D Structure?

F010978

Metagenome / Metatranscriptome

296

F012191

Metagenome / Metatranscriptome

282

F015559

Metagenome / Metatranscriptome

253

F017834

Metatranscriptome

238

F019484

Metagenome / Metatranscriptome

229

F043734

Metagenome / Metatranscriptome

155

F056250

Metagenome / Metatranscriptome

137

F057823

Metatranscriptome

135

F067275

Metatranscriptome

125

F071920

Metagenome / Metatranscriptome

121

F080844

Metagenome / Metatranscriptome

114

F094737

Metatranscriptome

105

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186645_100605	Not Available	1740	Open in IMG/M
Ga0186645_104087	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae	1008	Open in IMG/M
Ga0186645_104366	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	982	Open in IMG/M
Ga0186645_105505	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	891	Open in IMG/M
Ga0186645_106391	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	826	Open in IMG/M
Ga0186645_107869	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	733	Open in IMG/M
Ga0186645_108111	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	719	Open in IMG/M
Ga0186645_108372	Not Available	703	Open in IMG/M
Ga0186645_109088	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	664	Open in IMG/M
Ga0186645_111978	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	524	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0186645_100605

Not Available

1740

Open in IMG/M

Ga0186645_104087

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae

1008

Open in IMG/M

Ga0186645_104366

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

982

Open in IMG/M

Ga0186645_105505

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

891

Open in IMG/M

Ga0186645_106391

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica

826

Open in IMG/M

Ga0186645_107869

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

733

Open in IMG/M

Ga0186645_108111

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina

719

Open in IMG/M

Ga0186645_108372

Not Available

703

Open in IMG/M

Ga0186645_109088

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi

664

Open in IMG/M

Ga0186645_111978

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi

524

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0186645_100605	Ga0186645_1006052	F019484	YFLTILGGSLKKIAKKITTRVPISRNVYTNASIILFN
Ga0186645_102013	Ga0186645_1020132	F010978	RRGAMAGNPFERTSVQILLVAALVALFANSAVDRTDDGLPWEITLTGFCVFAVVFSAIYANRTEVALSIICIILCIVPTYFVHNFEVPCSNWELGSKFSLSTTKSQLLDGVFRMEPNASRFDKFLPLGLSMYSLSMFNPGIAIKCNTSEIYHSGIKLDDAAGEKTHDYLLLSSPRKVKSSTTGIMLLARVPVSIELWPAGIEDYSFNLQTASNIIAPPTVVGELMPLDKGPAIEHLKKKHHLRPFLIDVYRVDYHFGGD
Ga0186645_104087	Ga0186645_1040871	F071920	AVSGMLVLPAIAAATPRFNNSKCPHYWELQAPRVASSFDFSRDVPGLYYELAFHDWTQRPLCPTPPRCITSLKQVRTHADGVRYVNDTWRLQCFGRAYPQTLLFNQTEARGALRGYVPTTRIPFLPESIAAGLVFPDTIVDFKRGAEGWLLEVQCVEALGGVRFVGINFYSKTKTEAAFQEMHQAALDRGLGFWMDSRPWGLSRVNHTDCPDEPHDVLEA
Ga0186645_104366	Ga0186645_1043661	F015559	MSHKLGSATKVGDALPNVEVHIGFAGLSPTNAKMTGDLAKGKTLWVGLPGAFTPT
Ga0186645_105505	Ga0186645_1055051	F067275	DHTMAEEVTAQAEFPWAKLGTDWKQVKGTGKVIASGMLAEERCAVSSIHVAHGVRYFMFNINTSALPDGHMFLGVAAFNGGSTDFQAPCKTWAFNPPTGNLYIGEKIDEHGSEQMKKHFFADKDESLLDRMPGSTCLAKVDMDAKTLEFSINGNEFIDAGVTLPDEGVRPFCFLYHENDSITLTEVDASGFGSGGVSRPSTAGTDSGIA
Ga0186645_106391	Ga0186645_1063911	F057823	TQQFVSRTGSSRGVYKRNGEIMAVPHPSAEASWAQNEKTAAHGITASTMKDSFKDPNLKAALTPYHPNAQRSRLPVSFKNEAKPYKRFCQVRNQQTYDFFDKGASGAGFVRFRTTSQNYYDYDTKALSVGESNQGIVSEKSKWIHQKQTM
Ga0186645_107869	Ga0186645_1078691	F056250	LPNLVLLVGLTNGYIVAVDFGALIKLQQSHKLPDRVSAMGTTRVFNDYLQDLSAFYTNSTGQRVACCGDTAVKIIHRTGVDLEVHLEVALDRKPKVGEYLDKVEWDDSAKAFACSSTDGYLYVHELLD
Ga0186645_108111	Ga0186645_1081111	F094737	QMVLSDSEAISRGFADERTGRIRTFQAGPDGPPGLDSQLCGFGAPRPTEVAKEVPLIEGRMKMFPGKHSSVGSVKEAVATGCPAIVHMQMDSDQWMSTYRATIDERQPTFRKGREGKKMVDALFGAKELYRPPREVYVEPKGAPPTAVRDMRVYKHMGTLSKAGQW
Ga0186645_108235	Ga0186645_1082351	F080844	ETKAAEVQGMAAPETPGYVVGAVTTRLTVTVPHGIVGGELVRVAAPDGSYHSIMVPAGLTAGQQFSVELLAGSNAVDIAKLKMELDAERALRRETQQEALRCRTALEEVQQKRMADHAFFRDMIKRQRRSIEHLGQQVET
Ga0186645_108236	Ga0186645_1082361	F080844	MAAPETPGYVVGAVTTRLTVTVPHGIVGGELVRVAAPDGSYHSIMVPAGLTAGQQFSVELLAGSNAVDIAKLKMELDAERALRRETQQEALRCRTALEEVQQKRMADHAFFRDMIKRQRRSIEHLGQQVET
Ga0186645_108372	Ga0186645_1083721	F012191	SIVFAKLYIPFALAPESMSFSRMSALAKTMDRAAARGMGAGMGGGGHANNPVFMFQADWAKNKHKGFIFVFGIFGLGCLIPYKLVSFAQSKAGVQW
Ga0186645_109088	Ga0186645_1090881	F017834	QPTHSVRPQSHMGKGKGVASFDLATALTKKETRTMRKSECMIQYHLARMPMYGAYESAQYAKANELRENMKNLEMKAKERWERGHV
Ga0186645_111978	Ga0186645_1119781	F043734	VSECTSWRQMNSFRAKQLLQPAARWGMTLGVVGFFLMYEDLPQLILQTPYGNFPGWEGVARHYGLLKPKE

Scaffold ID

Protein ID

Family

Sequence

Ga0186645_100605

Ga0186645_1006052

F019484

YFLTILGGSLKKIAKKITTRVPISRNVYTNASIILFN

Ga0186645_102013

Ga0186645_1020132

F010978

RRGAMAGNPFERTSVQILLVAALVALFANSAVDRTDDGLPWEITLTGFCVFAVVFSAIYANRTEVALSIICIILCIVPTYFVHNFEVPCSNWELGSKFSLSTTKSQLLDGVFRMEPNASRFDKFLPLGLSMYSLSMFNPGIAIKCNTSEIYHSGIKLDDAAGEKTHDYLLLSSPRKVKSSTTGIMLLARVPVSIELWPAGIEDYSFNLQTASNIIAPPTVVGELMPLDKGPAIEHLKKKHHLRPFLIDVYRVDYHFGGD

Ga0186645_104087

Ga0186645_1040871

F071920

AVSGMLVLPAIAAATPRFNNSKCPHYWELQAPRVASSFDFSRDVPGLYYELAFHDWTQRPLCPTPPRCITSLKQVRTHADGVRYVNDTWRLQCFGRAYPQTLLFNQTEARGALRGYVPTTRIPFLPESIAAGLVFPDTIVDFKRGAEGWLLEVQCVEALGGVRFVGINFYSKTKTEAAFQEMHQAALDRGLGFWMDSRPWGLSRVNHTDCPDEPHDVLEA

Ga0186645_104366

Ga0186645_1043661

F015559

MSHKLGSATKVGDALPNVEVHIGFAGLSPTNAKMTGDLAKGKTLWVGLPGAFTPT

Ga0186645_105505

Ga0186645_1055051

F067275

DHTMAEEVTAQAEFPWAKLGTDWKQVKGTGKVIASGMLAEERCAVSSIHVAHGVRYFMFNINTSALPDGHMFLGVAAFNGGSTDFQAPCKTWAFNPPTGNLYIGEKIDEHGSEQMKKHFFADKDESLLDRMPGSTCLAKVDMDAKTLEFSINGNEFIDAGVTLPDEGVRPFCFLYHENDSITLTEVDASGFGSGGVSRPSTAGTDSGIA

Ga0186645_106391

Ga0186645_1063911

F057823

TQQFVSRTGSSRGVYKRNGEIMAVPHPSAEASWAQNEKTAAHGITASTMKDSFKDPNLKAALTPYHPNAQRSRLPVSFKNEAKPYKRFCQVRNQQTYDFFDKGASGAGFVRFRTTSQNYYDYDTKALSVGESNQGIVSEKSKWIHQKQTM

Ga0186645_107869

Ga0186645_1078691

F056250

LPNLVLLVGLTNGYIVAVDFGALIKLQQSHKLPDRVSAMGTTRVFNDYLQDLSAFYTNSTGQRVACCGDTAVKIIHRTGVDLEVHLEVALDRKPKVGEYLDKVEWDDSAKAFACSSTDGYLYVHELLD

Ga0186645_108111

Ga0186645_1081111

F094737

QMVLSDSEAISRGFADERTGRIRTFQAGPDGPPGLDSQLCGFGAPRPTEVAKEVPLIEGRMKMFPGKHSSVGSVKEAVATGCPAIVHMQMDSDQWMSTYRATIDERQPTFRKGREGKKMVDALFGAKELYRPPREVYVEPKGAPPTAVRDMRVYKHMGTLSKAGQW

Ga0186645_108235

Ga0186645_1082351

F080844

ETKAAEVQGMAAPETPGYVVGAVTTRLTVTVPHGIVGGELVRVAAPDGSYHSIMVPAGLTAGQQFSVELLAGSNAVDIAKLKMELDAERALRRETQQEALRCRTALEEVQQKRMADHAFFRDMIKRQRRSIEHLGQQVET

Ga0186645_108236

Ga0186645_1082361

F080844

MAAPETPGYVVGAVTTRLTVTVPHGIVGGELVRVAAPDGSYHSIMVPAGLTAGQQFSVELLAGSNAVDIAKLKMELDAERALRRETQQEALRCRTALEEVQQKRMADHAFFRDMIKRQRRSIEHLGQQVET

Ga0186645_108372

Ga0186645_1083721

F012191

SIVFAKLYIPFALAPESMSFSRMSALAKTMDRAAARGMGAGMGGGGHANNPVFMFQADWAKNKHKGFIFVFGIFGLGCLIPYKLVSFAQSKAGVQW

Ga0186645_109088

Ga0186645_1090881

F017834

QPTHSVRPQSHMGKGKGVASFDLATALTKKETRTMRKSECMIQYHLARMPMYGAYESAQYAKANELRENMKNLEMKAKERWERGHV

Ga0186645_111978

Ga0186645_1119781

F043734

VSECTSWRQMNSFRAKQLLQPAARWGMTLGVVGFFLMYEDLPQLILQTPYGNFPGWEGVARHYGLLKPKE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300016859: Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, f/200 phosphorous, 18 C, 18 psu salinity and 626 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0007)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences