Sample 3300016838

Overview

Basic Information
IMG/M Taxon OID	3300016838 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0212358 \| Ga0186646
Sample Name	Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, f/200 nitrate, 18 C, 18 psu salinity and 617 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0814)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	19110411
Sequencing Scaffolds	9
Novel Protein Genes	11
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	3
All Organisms → cellular organisms → Eukaryota → Haptista	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: Lake Texoma, Oklahoma
Coordinates	Lat. (^o)	33.98	Long. (^o)	-96.67	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005228	Metagenome / Metatranscriptome	407	Y
F012191	Metagenome / Metatranscriptome	282	Y
F013853	Metagenome / Metatranscriptome	267	N
F015559	Metagenome / Metatranscriptome	253	Y
F043734	Metagenome / Metatranscriptome	155	Y
F057823	Metatranscriptome	135	N
F067275	Metatranscriptome	125	N
F071920	Metagenome / Metatranscriptome	121	Y
F080828	Metatranscriptome	114	Y
F080844	Metagenome / Metatranscriptome	114	N

Family

Category

Number of Sequences

3D Structure?

F005228

Metagenome / Metatranscriptome

407

F012191

Metagenome / Metatranscriptome

282

F013853

Metagenome / Metatranscriptome

267

F015559

Metagenome / Metatranscriptome

253

F043734

Metagenome / Metatranscriptome

155

F057823

Metatranscriptome

135

F067275

Metatranscriptome

125

F071920

Metagenome / Metatranscriptome

121

F080828

Metatranscriptome

114

F080844

Metagenome / Metatranscriptome

114

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186646_104101	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	1358	Open in IMG/M
Ga0186646_104151	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	1350	Open in IMG/M
Ga0186646_107156	All Organisms → cellular organisms → Eukaryota → Haptista	957	Open in IMG/M
Ga0186646_107353	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	936	Open in IMG/M
Ga0186646_107861	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	887	Open in IMG/M
Ga0186646_107923	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae	882	Open in IMG/M
Ga0186646_109651	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica	727	Open in IMG/M
Ga0186646_110254	Not Available	679	Open in IMG/M
Ga0186646_112641	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	505	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0186646_104101

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

1358

Open in IMG/M

Ga0186646_104151

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

1350

Open in IMG/M

Ga0186646_107156

All Organisms → cellular organisms → Eukaryota → Haptista

957

Open in IMG/M

Ga0186646_107353

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

936

Open in IMG/M

Ga0186646_107861

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

887

Open in IMG/M

Ga0186646_107923

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae

882

Open in IMG/M

Ga0186646_109651

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica

727

Open in IMG/M

Ga0186646_110254

Not Available

679

Open in IMG/M

Ga0186646_112641

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi

505

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0186646_103605	Ga0186646_1036051	F013853	VGPEQLGSSPFKFAWRPGGQMLATASKRNGVLTLFLFRRDGTVQNQASLGAGKCIWLEWESKGQTLGLLQEGSGVFLWDMPAASSDEFTLPMGLCPSITQFASFCRWSKNSPLLAIGTQQGKVIIFNKAEGVMQLHEKNGKHGAAVTCGDWLFDNRLGLASGLRVKISQPISETGSKWTSFSKFRLGGMLSKVPRHIRAAGEPKALAFTLGFPPFVAVSIGDKYLLTFDTTRVNEDLGLTFPEDYGQIAGFQWLPNLVLLVGLTNGYIVAVDFGALIKLQQSHKLPDRVSAMGTTRVFNDYLQDLSAFYTNSTGQRVACCGDTAVKIIHRTGVDLEVHLEVALDRKPKVGEYLDKVEWDDSAKAFACSSTDGYLYVHELLD
Ga0186646_104101	Ga0186646_1041011	F005228	VRGEAVARQRATMDQPKQIVAAKYQQTTSRATPDAVARELRKLPAASGPLDSRKRALHDLAHALAYVQEQHKTKVVEACTKDDAAGLLLSLLDDIDAAPPVPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAAMLRLPPSGQRISAMELLMDTLLNTADSESVLFYAVAGLYNLSNDGSFADLAARKPGLLQKLEQLSASPNPDTVKYASGTVEYWRKHAGAWPPH
Ga0186646_104151	Ga0186646_1041511	F005228	MDQPKQIVAAKYQQTTSRATPDAVARELRKLPAASGPLDSRKRALHDLAHALAYVQEQHKTKVVEACTKDDAAGLLLSLLDDIDAAPPVPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAAMLRLPPSGQRISAMELLMDTLLNTADSESVLFYAVAGLYNLSNDGSFADLAARKPGLLQKLEQLSASPNPDTVKYASGTVEYWRKHAGAWPPH
Ga0186646_107156	Ga0186646_1071561	F080828	MVALALLLAMTAKLPFDAATDHIDHDCWVPDYCEPKEFRYKLCKLRLRGRKPKGDEFQCGPNEFCEEVDCLEKCWLPTQCTCASEGKFAGRMMCSEDCYAHPSTQWGLCVPLPEGQEEPEHDEPLKTHFHFYTQHELLYNSKLHIDEDSPMRRVPTPTSKEEL
Ga0186646_107353	Ga0186646_1073532	F015559	AMSHKLGSATKVGDALPNVEVHIGFAGLSPTNAKMTGDLAKGKTLWVGLPGAFTPT
Ga0186646_107861	Ga0186646_1078611	F067275	CTTATDHTMAEEVTAQAEFPWAKLGTDWKQVKGTGKVIASGMLAEERCAVSSIHVAHGVRYFMFNINTSALPDGHMFLGVAAFNGGSTDFQAPCKTWAFNPPTGNLYIGEKIDEHGSEQMKKHFFADKDESLLDRMPGSTCLAKVDMDAKTLEFSINGNEFIDAGVTLPDEGVRPFCFLYHENDSITLTEVDASGFGSGGVSRPSTAGTDSGIA
Ga0186646_107923	Ga0186646_1079231	F071920	AVSGMLVLPAIAAATPRFNNSKCPHYWELQAPRVASSFDFSRDVPGLYYELAFHDWTQRPLCPTPPRCITSLKQVRTHADGVRYVNDTWRLQCFGRAYPQTLLFNQTEARGALRGYVPTTRIPFLPESIAAGLVFPDTIVDFKRGAEGWLLEVQCVEALGGVRFVGINFYSKTKTEAAFQEMLQAALDRGLGFWMDSRPWGLSRVNHTDCPDEPHDVLEA
Ga0186646_109651	Ga0186646_1096511	F057823	FLAMATQQFVSRTGSSRGVYKRNGEIMAVPHPSAEASWAQNEKTAAHGITASTMKDSFKDPNLKAALTPYHPNAQRSRLPVSFKNEAKPYKRFCQVRNQQTYDFFDKGASGAGFVRFRTTSQNYYDYDTKALSVGESNQGIVSEKSKWIHQKQTM
Ga0186646_110254	Ga0186646_1102541	F012191	ISYISALAPESMSFSRMSALAKTMDRAAARGMGAGMGGGGHANNPVFMFQADWAKNKHKGFIFVFGIFGLGCLIPYKLVSFAQSKAGVQW
Ga0186646_110895	Ga0186646_1108951	F080844	AAEVQGMAAPETPGYVVGAVTTRLTVTVPHGIVGGELVRVAAPDGSYHSIMVPAGLTAGQQFSVELLAGSNAVDIAKLKMELDAERALRRETQQEALRCRTALEEVQQKRMADHAFFRDMIKRQRRSIEHLGQQVET
Ga0186646_112641	Ga0186646_1126411	F043734	GGAPLPLRQMNSFRAKQLLQPAARWGMTLGVVGFFLMYEDLPQLILQTPYGNFPGWEGVARHYGLLKPKE

Scaffold ID

Protein ID

Family

Sequence

Ga0186646_103605

Ga0186646_1036051

F013853

VGPEQLGSSPFKFAWRPGGQMLATASKRNGVLTLFLFRRDGTVQNQASLGAGKCIWLEWESKGQTLGLLQEGSGVFLWDMPAASSDEFTLPMGLCPSITQFASFCRWSKNSPLLAIGTQQGKVIIFNKAEGVMQLHEKNGKHGAAVTCGDWLFDNRLGLASGLRVKISQPISETGSKWTSFSKFRLGGMLSKVPRHIRAAGEPKALAFTLGFPPFVAVSIGDKYLLTFDTTRVNEDLGLTFPEDYGQIAGFQWLPNLVLLVGLTNGYIVAVDFGALIKLQQSHKLPDRVSAMGTTRVFNDYLQDLSAFYTNSTGQRVACCGDTAVKIIHRTGVDLEVHLEVALDRKPKVGEYLDKVEWDDSAKAFACSSTDGYLYVHELLD

Ga0186646_104101

Ga0186646_1041011

F005228

VRGEAVARQRATMDQPKQIVAAKYQQTTSRATPDAVARELRKLPAASGPLDSRKRALHDLAHALAYVQEQHKTKVVEACTKDDAAGLLLSLLDDIDAAPPVPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAAMLRLPPSGQRISAMELLMDTLLNTADSESVLFYAVAGLYNLSNDGSFADLAARKPGLLQKLEQLSASPNPDTVKYASGTVEYWRKHAGAWPPH

Ga0186646_104151

Ga0186646_1041511

F005228

MDQPKQIVAAKYQQTTSRATPDAVARELRKLPAASGPLDSRKRALHDLAHALAYVQEQHKTKVVEACTKDDAAGLLLSLLDDIDAAPPVPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAAMLRLPPSGQRISAMELLMDTLLNTADSESVLFYAVAGLYNLSNDGSFADLAARKPGLLQKLEQLSASPNPDTVKYASGTVEYWRKHAGAWPPH

Ga0186646_107156

Ga0186646_1071561

F080828

MVALALLLAMTAKLPFDAATDHIDHDCWVPDYCEPKEFRYKLCKLRLRGRKPKGDEFQCGPNEFCEEVDCLEKCWLPTQCTCASEGKFAGRMMCSEDCYAHPSTQWGLCVPLPEGQEEPEHDEPLKTHFHFYTQHELLYNSKLHIDEDSPMRRVPTPTSKEEL

Ga0186646_107353

Ga0186646_1073532

F015559

AMSHKLGSATKVGDALPNVEVHIGFAGLSPTNAKMTGDLAKGKTLWVGLPGAFTPT

Ga0186646_107861

Ga0186646_1078611

F067275

CTTATDHTMAEEVTAQAEFPWAKLGTDWKQVKGTGKVIASGMLAEERCAVSSIHVAHGVRYFMFNINTSALPDGHMFLGVAAFNGGSTDFQAPCKTWAFNPPTGNLYIGEKIDEHGSEQMKKHFFADKDESLLDRMPGSTCLAKVDMDAKTLEFSINGNEFIDAGVTLPDEGVRPFCFLYHENDSITLTEVDASGFGSGGVSRPSTAGTDSGIA

Ga0186646_107923

Ga0186646_1079231

F071920

AVSGMLVLPAIAAATPRFNNSKCPHYWELQAPRVASSFDFSRDVPGLYYELAFHDWTQRPLCPTPPRCITSLKQVRTHADGVRYVNDTWRLQCFGRAYPQTLLFNQTEARGALRGYVPTTRIPFLPESIAAGLVFPDTIVDFKRGAEGWLLEVQCVEALGGVRFVGINFYSKTKTEAAFQEMLQAALDRGLGFWMDSRPWGLSRVNHTDCPDEPHDVLEA

Ga0186646_109651

Ga0186646_1096511

F057823

FLAMATQQFVSRTGSSRGVYKRNGEIMAVPHPSAEASWAQNEKTAAHGITASTMKDSFKDPNLKAALTPYHPNAQRSRLPVSFKNEAKPYKRFCQVRNQQTYDFFDKGASGAGFVRFRTTSQNYYDYDTKALSVGESNQGIVSEKSKWIHQKQTM

Ga0186646_110254

Ga0186646_1102541

F012191

ISYISALAPESMSFSRMSALAKTMDRAAARGMGAGMGGGGHANNPVFMFQADWAKNKHKGFIFVFGIFGLGCLIPYKLVSFAQSKAGVQW

Ga0186646_110895

Ga0186646_1108951

F080844

AAEVQGMAAPETPGYVVGAVTTRLTVTVPHGIVGGELVRVAAPDGSYHSIMVPAGLTAGQQFSVELLAGSNAVDIAKLKMELDAERALRRETQQEALRCRTALEEVQQKRMADHAFFRDMIKRQRRSIEHLGQQVET

Ga0186646_112641

Ga0186646_1126411

F043734

GGAPLPLRQMNSFRAKQLLQPAARWGMTLGVVGFFLMYEDLPQLILQTPYGNFPGWEGVARHYGLLKPKE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300016838: Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, f/200 nitrate, 18 C, 18 psu salinity and 617 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0814)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences