3300016826: Metatranscriptome of coastal eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 14 C, 36 psu salinity and 153 ?mol photons light - Skeletonema menzellii CCMP 793 (MMETSP0603)

Overview

Basic Information

• IMG/M Taxon OID: 3300016826
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212411 | Ga0186699
• Sample Name: Metatranscriptome of coastal eukaryotic communities from Atlantic Ocean in f/2 medium with seawater, 14 C, 36 psu salinity and 153 ?mol photons light - Skeletonema menzellii CCMP 793 (MMETSP0603)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 24500653
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): 41.566
  • Long. (^o): -70.5842
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034938	Metagenome / Metatranscriptome	173	Y
F051162	Metagenome / Metatranscriptome	144	Y
F099352	Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186699_110091	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	921
Ga0186699_112287	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	650
Ga0186699_113047	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	556

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186699_110091	Ga0186699_1100911	F034938	TNSNMNTLVQWRGNVVSEKEAKALRHVVDDLQDHFGHQRPDPRVRFNIVNLAHPGQGHIWHGDVEFTYDIEGDHCNLKYTSMDVCVDLTPKLVHRHGQPMLQNYGKTWVYVYLPQPTIDRIKSYVKAGTGWDVSDEGFIEDPNRNVTAIEAKMNHRSEELPEPSFWAMKDKDASEGEEEIMSFSRIGSVQEVMAQSHQQHVHRGVGIFSVTMEVEGTPNFMPTPGEGDEAKLRFTLVSARTWGFTESVAPIVYAPSKWH
Ga0186699_112287	Ga0186699_1122871	F099352	MVFNGAEAFKGGASAPSLEREVSVTSNNNRVLLDSQELNAASGAFNLCCGEAYARFSELKRLKVHPGNMTKERDAVESCSADVYNGIKSSCVEQFDAVMSCLSDNPTEWAKCASMRRELEVCSVKNNLGELKKLSS
Ga0186699_113047	Ga0186699_1130471	F051162	MPLVKVFARVGMTKPIPLASLQSKLCAIWSTKPETTKLILSRVEDWTSDSFDEDCYIDIRAYGKSERTREFVLDGMTQVQKAFAEENLVANVRLETYEGERYFHVPPPKAST