3300016816: Metatranscriptome of coastal eukaryotic communities from Mediterranean Sea in K medium, 20 C, 36 psu salinity and 301 ?mol photons light - Leptocylindrus aporus B651 (MMETSP0322)

Overview

Basic Information

• IMG/M Taxon OID: 3300016816
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212395 | Ga0186683
• Sample Name: Metatranscriptome of coastal eukaryotic communities from Mediterranean Sea in K medium, 20 C, 36 psu salinity and 301 ?mol photons light - Leptocylindrus aporus B651 (MMETSP0322)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21607929
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Mediterranean Sea
• Coordinates
  • Lat. (^o): 40.8083
  • Long. (^o): 14.25
  • Alt. (m): N/A
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033284	Metagenome / Metatranscriptome	177	Y
F051162	Metagenome / Metatranscriptome	144	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186683_101596	Not Available	2591
Ga0186683_102194	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	2285
Ga0186683_111400	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	650

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186683_101596	Ga0186683_1015961	F033284	MLIRRVQCIRRTKEAATQAACAGNTRGYHSEYGNSLFNNREKDDAYYSSSEPVTDEE
Ga0186683_102194	Ga0186683_1021941	F033284	MSLKTQTELMIRRVQFIRRTKEAATQAACAGNTRGYHSEYGNSLFNNREKDDAYYSSSEPVTDEE
Ga0186683_111400	Ga0186683_1114001	F051162	MPLVEIFARQCMTKVIPLNALQSRMCAIWGTTPETTKLILNRVEDWTTSGLVDEDCYVSIRAKGTEQRTRTIVLDGMKQVQNCFAQEGLIANVRLETYEGERYFHVPPPMKN