3300016722: Microbial communities from bioreactor (seeded with anoxic lake sediment) at LBNL, California, USA - Biofuel metagenome 2

Overview

Basic Information

• IMG/M Taxon OID: 3300016722
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046201 | Gp0052329 | Ga0183100
• Sample Name: Microbial communities from bioreactor (seeded with anoxic lake sediment) at LBNL, California, USA - Biofuel metagenome 2
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 206159530
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	1
All Organisms → cellular organisms → Bacteria	1
Not Available	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → unclassified Methanosarcina → Methanosarcina sp. KYL-1	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor → Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lawrence Berkeley National Laboratory, California, USA
• Coordinates
  • Lat. (^o): 37.8754404
  • Long. (^o): -122.2477251
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017253	Metagenome	242	Y
F051098	Metagenome	144	Y
F080760	Metagenome / Metatranscriptome	114	Y
F083634	Metagenome	112	Y
F106182	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0183100_1006882	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae	3141
Ga0183100_1009076	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	2520
Ga0183100_1013927	All Organisms → cellular organisms → Bacteria	1799
Ga0183100_1032996	Not Available	916
Ga0183100_1036010	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → unclassified Methanosarcina → Methanosarcina sp. KYL-1	856
Ga0183100_1036194	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	853
Ga0183100_1046977	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	702
Ga0183100_1051971	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652
Ga0183100_1061087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582
Ga0183100_1072795	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0183100_1006882	Ga0183100_10068823	F051098	MIITPFYYCRNCRKLYPGNKVEISHAPIEKLVSAACYTLGSQDHIFRIGGKVIQLSDLHHCNDHEIGLANFIKIQIDKEEKE
Ga0183100_1009076	Ga0183100_10090764	F051098	MIITPFYYCRNCRKLYPGNNIEISHAPIDKLVSAARYTLGSQDHVFRIGGKVIQLSDLHHCNDHEVGLANVTKIQTTKEDIEHKNIS
Ga0183100_1013927	Ga0183100_10139274	F083634	DQTISLDRVKIHGRVCRLARKLIVTVEHEDDRLTLSNKELGLVVSAETLEEGIAGLSEELAALWEVYVDEDPVNLTADALRLRSNLTSLVPAGVSQ
Ga0183100_1032996	Ga0183100_10329961	F051098	MIITPFYYRRNCRKLYPGNKVEIGNATIDKLVSAARYTLGSQDHVFRIGRKVIQLSDLHHCNGHEVGLANFTKIQITKEEKE
Ga0183100_1036010	Ga0183100_10360101	F051098	MIITPFYYCRNCRKLYPGNKLEIVNPSIEKLVSAARYTLGSQEHIFRIGGKTIQLSDLHHCNDHEVGLANFIKIQIETDEKKK
Ga0183100_1036194	Ga0183100_10361942	F051098	SMIITPFYYCRNCRKLYPGNKLEIGNAPIDKLVSAACYTLGSQDHIFRIGGKVIQLSDLHYCNDHEIGLANFTKIQIDKEKKE
Ga0183100_1046977	Ga0183100_10469771	F017253	ISKVTTNVGSYTQARTAGDFLSSRKTARAERCPPKTTATTLEGLAEVSG
Ga0183100_1051971	Ga0183100_10519712	F106182	MKWLDKLFAWLLVALGAAHLMALWIPKLGLLRGPWTGGAAVAIISAGLMNAARSQRKSDRFLRSCTALATLLTAAMCLITLYRFSGNVLHQPAALAISVLVLIELFFCVAR
Ga0183100_1061087	Ga0183100_10610871	F080760	VRAITSGSLKDGYGLVLMATKAPMTAANSDEQALPIVDPQRETCIEFVKFCKEQHLKSRAAHTFLRVFHNKTWDAECEKIRASMRPEVDRIFGPAEKALNEGANCKEVLALLVRSLKEAEDL
Ga0183100_1072795	Ga0183100_10727951	F051098	MIITPFYYCRNCRKLYPENKLEIANIPTEKLVSAVHYTLGSQDYIFRIGGKVIQLSDLHHCNDDEIGLANFTKIQINKEEKE