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Sample 3300016718
3300016718: Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in L1 medium, 20 C, 21 psu salinity and 455 ?mol photons light - Leptocylindrus danicus CCMP 1856 (MMETSP1362)
Overview
Basic Information |
IMG/M Taxon OID | 3300016718 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0212136 | Ga0186424 |
Sample Name | Metatranscriptome of marine eukaryotic communities from Gulf of Mexico in L1 medium, 20 C, 21 psu salinity and 455 ?mol photons light - Leptocylindrus danicus CCMP 1856 (MMETSP1362) |
Sequencing Status | Permanent Draft |
Sequencing Center | National Center for Genome Resources |
Published? | N |
Use Policy | Open |
Dataset Contents |
Total Genome Size | 26393503 |
Sequencing Scaffolds | 1 |
Novel Protein Genes | 1 |
Associated Families | 1 |
Dataset Phylogeny |
Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 1 |
Ecosystem and Geography
Ecosystem Assignment (GOLD) |
Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Location Information |
Location | Gulf of Mexico |
Coordinates | Lat. (o) | 25.0 | Long. (o) | -90.0 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
Family | Category | Number of Sequences | 3D Structure? |
F051162 | Metagenome / Metatranscriptome | 144 | Y |
Associated Scaffolds
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0186424_114059 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | 622 | Open in IMG/M |
Sequences
Scaffold ID | Protein ID | Family | Sequence |
Ga0186424_114059 | Ga0186424_1140591 | F051162 | MPLVEIFARKCMAKPIPLSSLQASMCKIWGTTPETTKLILSRVEDWTTSGLQDEDCYVSIRAKGTEQRTREIVLDGMKQVSDAFSTHDLVANVRLETYEGARYFHVPPPMKK |