3300015240: Freshwater microbial mat microbial communities from Canadian High Arctic Lake 9K, Kuujjuarapik, Canada - Sample L9Kc

Overview

Basic Information

• IMG/M Taxon OID: 3300015240
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128895 | Gp0209315 | Ga0182876
• Sample Name: Freshwater microbial mat microbial communities from Canadian High Arctic Lake 9K, Kuujjuarapik, Canada - Sample L9Kc
• Sequencing Status: Permanent Draft
• Sequencing Center: Laval University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1268020347
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	4
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Mat Communities From High Arctic Lakes
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lake → Unclassified → Microbial Mat → Microbial Mat Communities From High Arctic Lakes

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: Kuujjuarapik
• Coordinates
  • Lat. (^o): 55.275009
  • Long. (^o): -77.758484
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008255	Metagenome / Metatranscriptome	336	Y
F014394	Metagenome / Metatranscriptome	263	Y
F025524	Metagenome / Metatranscriptome	201	Y
F034114	Metagenome / Metatranscriptome	175	Y
F037780	Metagenome / Metatranscriptome	167	Y
F039244	Metagenome	164	Y
F040701	Metagenome	161	Y
F043249	Metagenome / Metatranscriptome	156	Y
F043793	Metagenome / Metatranscriptome	155	Y
F070266	Metagenome	123	Y
F080041	Metagenome	115	N
F093898	Metagenome / Metatranscriptome	106	Y
F095853	Metagenome / Metatranscriptome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0182876_10000655	All Organisms → cellular organisms → Bacteria → Proteobacteria	2481
Ga0182876_10001663	Not Available	1920
Ga0182876_10004476	Not Available	1422
Ga0182876_10006209	All Organisms → cellular organisms → Bacteria	1275
Ga0182876_10011301	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1044
Ga0182876_10030702	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	730
Ga0182876_10035573	All Organisms → cellular organisms → Bacteria	688
Ga0182876_10039081	Not Available	660
Ga0182876_10039756	All Organisms → cellular organisms → Bacteria	655
Ga0182876_10042426	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	638
Ga0182876_10042981	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	635
Ga0182876_10052907	Not Available	581
Ga0182876_10054740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	573
Ga0182876_10069789	All Organisms → cellular organisms → Bacteria	517

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0182876_10000655	Ga0182876_100006553	F043793	MLVPDRLTVIVTVNICDAAATALQINGSEGSLMIEWE*
Ga0182876_10001663	Ga0182876_100016635	F034114	PVIMRETSVAAGAVNENLLAGSAFEFARTNSLVSIGLNQSATGGFATINSGADVVAEEFAPPIAGVYPVIPDGMYFSDVAAAGDRLVIRYRNPTGGALVVRVVCQVTAL*
Ga0182876_10004476	Ga0182876_100044762	F034114	MPVIMREQSVAAGAVNENILSGSAFEFARQNSLVSIGVHQAATGGFATINSGADVIAEEFSPPIATVYPIIPDNMYFSDVAAAGDRLVIRYRNPTGAAIIVRVVCQVTAL*
Ga0182876_10006209	Ga0182876_100062091	F037780	AKRWSAWVRASGRPEGGNDDGTTPTQKSDLFVGAMTPVKAG*
Ga0182876_10011301	Ga0182876_100113011	F070266	ELASGPVVATMCHPYTWKSFQRGVRRALGGNPKRSPRLTRRELAEEAARAGLRLERVIPVMPLLSEVWVVVLRALPRTS*
Ga0182876_10030702	Ga0182876_100307021	F043249	MPKIVGTRERIHQPFYDSLIRIDGSGDLRQANVGVFGAVQSRSQLFTRQGSDIASSNLSTGGFFPSDQTFVILAVRVWTYFRFNTESSRSTAGADPALFPPINANAPSPVSVGPGVTADRISRVHKLYHQTQNQLFWQFQAGDKPQFTTYTAYTPFAGGLDGFFSDSRLPRANNGVPTSSALMRLARPILIPPRQGFVVIAIASPIGQAQ
Ga0182876_10035573	Ga0182876_100355732	F095853	VILWVLWRRGLLRRFDREKVGFFLGHGADRLDLSRRYPLWRRLGLWHMIRAPA
Ga0182876_10039081	Ga0182876_100390811	F008255	AAMLRRSSPSRQEPLMINQMQEFVAEQAAALGSQVEKIRKGSMETVREVAVDSASSLKSLKSPVRTLARSGIKVTAVSQTAVASLIELQSDMLTSAISAAALRLERASRAENIVELVREQFEMIPATRDRLVEDAQRAALIFKHAGRDLRGVATNLYERVVETAEENIPEVTVTKRKVKRAVRKTKPAVRKTGTRARKTAAAA*
Ga0182876_10039756	Ga0182876_100397561	F039244	MPQQVPAFQFSDDAKRVRQVIYEHWCAHGRAPAMATG
Ga0182876_10042426	Ga0182876_100424262	F080041	VTPTENTSEFNFDIYCFDIIQKDRANIITILSDTQQILNDLYVYYMTSNDYSFDVVGMPTFSALNNDLLDYAAGYVMNITLTVNDWTDCAVPL*
Ga0182876_10042981	Ga0182876_100429812	F025524	MISFQIPEQLATATRSYLLAFGHPVPDEIVERYATRAGPLLLEIRQAIALQRPVK
Ga0182876_10052907	Ga0182876_100529072	F040701	VADSYFDPVASVWSRGAGIALLLAAAGLTTALGYALFEIVVQDESRRTFTSSSLVSGLILLALCGICWQAGFRLAFNRPDRNGSLFSRPAWFAIGSGLIVVTVLMAWAIVSARSPTGLDYWVVITLAALGVWCIILALRPGRRQTP*
Ga0182876_10054740	Ga0182876_100547401	F093898	KRRCHWREFSMMRFLISRAVNPPISLFDGLKTWNRIAHALREPPRKRTYQADRMDDFLC*
Ga0182876_10069789	Ga0182876_100697891	F014394	SITERRRGEIPGGGKMRVGTRFLAVLLAAAVWIYAGLSVASRPVAQQAITPSVLDVAASCAQAVVD*