NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F043793

Metagenome / Metatranscriptome Family F043793

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F043793
Family Type Metagenome / Metatranscriptome
Number of Sequences 155
Average Sequence Length 37 residues
Representative Sequence MLVLRTLTVKMTVKVCEAAASALQINSLEGSLMIEWE
Number of Associated Samples 98
Number of Associated Scaffolds 155

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 41.83 %
% of genes near scaffold ends (potentially truncated) 21.94 %
% of genes from short scaffolds (< 2000 bps) 70.32 %
Associated GOLD sequencing projects 89
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (61.935 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment
(21.290 % of family members)
Environment Ontology (ENVO) Unclassified
(41.935 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Sediment (non-saline)
(39.355 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 46.15%    β-sheet: 0.00%    Coil/Unstructured: 53.85%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 155 Family Scaffolds
PF01381HTH_3 4.52
PF05015HigB-like_toxin 3.87
PF09907HigB_toxin 2.58
PF13338AbiEi_4 2.58
PF01850PIN 1.94
PF14437MafB19-deam 1.29
PF06742DUF1214 1.29
PF00378ECH_1 1.29
PF00872Transposase_mut 1.29
PF07969Amidohydro_3 1.29
PF00690Cation_ATPase_N 1.29
PF02518HATPase_c 1.29
PF07676PD40 0.65
PF08681DUF1778 0.65
PF01027Bax1-I 0.65
PF06348DUF1059 0.65
PF02777Sod_Fe_C 0.65
PF12146Hydrolase_4 0.65
PF13377Peripla_BP_3 0.65
PF00211Guanylate_cyc 0.65
PF08450SGL 0.65
PF02368Big_2 0.65
PF00702Hydrolase 0.65
PF05489Phage_tail_X 0.65
PF13751DDE_Tnp_1_6 0.65
PF13511DUF4124 0.65
PF08240ADH_N 0.65
PF05973Gp49 0.65
PF06779MFS_4 0.65
PF00171Aldedh 0.65
PF13193AMP-binding_C 0.65
PF01527HTH_Tnp_1 0.65
PF01425Amidase 0.65
PF03466LysR_substrate 0.65
PF01464SLT 0.65
PF00383dCMP_cyt_deam_1 0.65
PF13356Arm-DNA-bind_3 0.65
PF09957VapB_antitoxin 0.65
PF02635DrsE 0.65
PF00196GerE 0.65
PF04851ResIII 0.65
PF01292Ni_hydr_CYTB 0.65
PF05521Phage_H_T_join 0.65
PF05016ParE_toxin 0.65
PF01979Amidohydro_1 0.65
PF01569PAP2 0.65
PF05598DUF772 0.65
PF13177DNA_pol3_delta2 0.65
PF03050DDE_Tnp_IS66 0.65
PF05258DciA 0.65
PF14659Phage_int_SAM_3 0.65
PF00027cNMP_binding 0.65
PF00486Trans_reg_C 0.65
PF09860DUF2087 0.65
PF13247Fer4_11 0.65
PF01609DDE_Tnp_1 0.65
PF00665rve 0.65
PF04986Y2_Tnp 0.65

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 155 Family Scaffolds
COG3549Plasmid maintenance system killer proteinDefense mechanisms [V] 3.87
COG0474Magnesium-transporting ATPase (P-type)Inorganic ion transport and metabolism [P] 1.29
COG3328Transposase (or an inactivated derivative)Mobilome: prophages, transposons [X] 1.29
COG5402Uncharacterized protein, contains DUF1214 domainFunction unknown [S] 1.29
COG5361Uncharacterized conserved proteinMobilome: prophages, transposons [X] 1.29
COG4679Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin systemDefense mechanisms [V] 0.65
COG3657Putative component of the toxin-antitoxin plasmid stabilization moduleDefense mechanisms [V] 0.65
COG3658Cytochrome b subunit of Ni2+-dependent hydrogenaseEnergy production and conversion [C] 0.65
COG4117Thiosulfate reductase cytochrome b subunitInorganic ion transport and metabolism [P] 0.65
COG4230Delta 1-pyrroline-5-carboxylate dehydrogenaseAmino acid transport and metabolism [E] 0.65
COG4453Uncharacterized conserved protein, DUF1778 familyFunction unknown [S] 0.65
COG4584TransposaseMobilome: prophages, transposons [X] 0.65
COG3391DNA-binding beta-propeller fold protein YncEGeneral function prediction only [R] 0.65
COG5004P2-like prophage tail protein XMobilome: prophages, transposons [X] 0.65
COG5421TransposaseMobilome: prophages, transposons [X] 0.65
COG5433Predicted transposase YbfD/YdcC associated with H repeatsMobilome: prophages, transposons [X] 0.65
COG5512Predicted nucleic acid-binding protein, contains Zn-ribbon domain (includes truncated derivatives)General function prediction only [R] 0.65
COG5659SRSO17 transposaseMobilome: prophages, transposons [X] 0.65
COG3436TransposaseMobilome: prophages, transposons [X] 0.65
COG0014Gamma-glutamyl phosphate reductaseAmino acid transport and metabolism [E] 0.65
COG3386Sugar lactone lactonase YvrECarbohydrate transport and metabolism [G] 0.65
COG3385IS4 transposase InsGMobilome: prophages, transposons [X] 0.65
COG3316Transposase (or an inactivated derivative), DDE domainMobilome: prophages, transposons [X] 0.65
COG3293TransposaseMobilome: prophages, transposons [X] 0.65
COG3039Transposase and inactivated derivatives, IS5 familyMobilome: prophages, transposons [X] 0.65
COG3038Cytochrome b561Energy production and conversion [C] 0.65
COG2864Cytochrome b subunit of formate dehydrogenaseEnergy production and conversion [C] 0.65
COG2826Transposase and inactivated derivatives, IS30 familyMobilome: prophages, transposons [X] 0.65
COG2801Transposase InsO and inactivated derivativesMobilome: prophages, transposons [X] 0.65
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 0.65
COG1969Ni,Fe-hydrogenase I cytochrome b subunitEnergy production and conversion [C] 0.65
COG1012Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenaseLipid transport and metabolism [I] 0.65
COG0605Superoxide dismutaseInorganic ion transport and metabolism [P] 0.65
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 0.65


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms61.94 %
UnclassifiedrootN/A38.06 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000558|Draft_11730333All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1121Open in IMG/M
3300001213|JGIcombinedJ13530_102116599All Organisms → cellular organisms → Bacteria758Open in IMG/M
3300001592|Draft_10017556All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales5737Open in IMG/M
3300004048|Ga0055494_10013713Not Available1229Open in IMG/M
3300005565|Ga0068885_1489202Not Available769Open in IMG/M
3300005656|Ga0073902_10230445All Organisms → cellular organisms → Bacteria → Proteobacteria832Open in IMG/M
3300005656|Ga0073902_10293633All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium719Open in IMG/M
3300005833|Ga0074472_10734774All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Candidatus Contendobacter → Candidatus Contendobacter odensis1972Open in IMG/M
3300005833|Ga0074472_11151951All Organisms → cellular organisms → Bacteria1428Open in IMG/M
3300005940|Ga0073913_10021180Not Available939Open in IMG/M
3300005982|Ga0075156_10048021All Organisms → cellular organisms → Bacteria → Proteobacteria2479Open in IMG/M
3300005986|Ga0075152_10012610All Organisms → cellular organisms → Bacteria → Proteobacteria5488Open in IMG/M
3300005987|Ga0075158_10340187All Organisms → cellular organisms → Bacteria → Proteobacteria847Open in IMG/M
3300006056|Ga0075163_10166911All Organisms → cellular organisms → Bacteria2594Open in IMG/M
3300006930|Ga0079303_10102139All Organisms → cellular organisms → Bacteria1082Open in IMG/M
3300007202|Ga0103274_1115025Not Available1081Open in IMG/M
3300007521|Ga0105044_10186020All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas2128Open in IMG/M
3300007521|Ga0105044_11298398Not Available533Open in IMG/M
3300009075|Ga0105090_10006490All Organisms → cellular organisms → Bacteria → Proteobacteria6829Open in IMG/M
3300009075|Ga0105090_10163999All Organisms → cellular organisms → Bacteria → Proteobacteria1384Open in IMG/M
3300009075|Ga0105090_10242961All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Spongiibacteraceae → Spongiibacter → unclassified Spongiibacter → Spongiibacter sp. IMCC219061109Open in IMG/M
3300009075|Ga0105090_10320752Not Available948Open in IMG/M
3300009075|Ga0105090_10350553Not Available902Open in IMG/M
3300009075|Ga0105090_10431418Not Available802Open in IMG/M
3300009078|Ga0105106_10083393All Organisms → cellular organisms → Bacteria → Proteobacteria2352Open in IMG/M
3300009078|Ga0105106_10153003All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1693Open in IMG/M
3300009111|Ga0115026_11472214Not Available566Open in IMG/M
3300009131|Ga0115027_11286259All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales589Open in IMG/M
3300009166|Ga0105100_10037353All Organisms → cellular organisms → Bacteria → Proteobacteria2818Open in IMG/M
3300009167|Ga0113563_11552121All Organisms → cellular organisms → Bacteria782Open in IMG/M
3300009167|Ga0113563_12416738Not Available633Open in IMG/M
3300009167|Ga0113563_12611589Not Available610Open in IMG/M
3300009169|Ga0105097_10861642Not Available519Open in IMG/M
3300009170|Ga0105096_10040406All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Thiomonas → unclassified Thiomonas → Thiomonas sp.2293Open in IMG/M
3300009170|Ga0105096_10107795All Organisms → cellular organisms → Bacteria1392Open in IMG/M
3300009170|Ga0105096_10144425All Organisms → cellular organisms → Bacteria1196Open in IMG/M
3300009170|Ga0105096_10646619Not Available558Open in IMG/M
3300009171|Ga0105101_10456052All Organisms → cellular organisms → Bacteria626Open in IMG/M
3300009430|Ga0114938_1005847All Organisms → cellular organisms → Bacteria → Proteobacteria6418Open in IMG/M
3300009455|Ga0114939_10194120All Organisms → cellular organisms → Bacteria → Proteobacteria859Open in IMG/M
3300009509|Ga0123573_10244779All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1753Open in IMG/M
3300009648|Ga0116175_1241456All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium594Open in IMG/M
3300009654|Ga0116167_1011680All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria4946Open in IMG/M
3300009668|Ga0116180_1028046All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae3021Open in IMG/M
3300009696|Ga0116177_10000416All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales31488Open in IMG/M
3300009771|Ga0116155_10049900All Organisms → cellular organisms → Bacteria2019Open in IMG/M
3300009782|Ga0116157_10143948All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1362Open in IMG/M
3300009782|Ga0116157_10182347Not Available1171Open in IMG/M
3300009870|Ga0131092_10004129All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria32578Open in IMG/M
3300009873|Ga0131077_11731951Not Available507Open in IMG/M
3300010334|Ga0136644_10307448All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas → unclassified Pelomonas → Pelomonas sp.917Open in IMG/M
3300010343|Ga0074044_10868198Not Available590Open in IMG/M
3300010345|Ga0116253_10872312Not Available530Open in IMG/M
3300010345|Ga0116253_10959434All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium500Open in IMG/M
3300010351|Ga0116248_10221942All Organisms → cellular organisms → Bacteria → Proteobacteria1525Open in IMG/M
3300010355|Ga0116242_10588571Not Available1004Open in IMG/M
3300010357|Ga0116249_11275007Not Available658Open in IMG/M
3300010357|Ga0116249_11956452Not Available514Open in IMG/M
3300010412|Ga0136852_10183762All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2099Open in IMG/M
3300012533|Ga0138256_10129384All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Leptothrix → Leptothrix cholodnii2356Open in IMG/M
3300012931|Ga0153915_10216420All Organisms → cellular organisms → Bacteria2109Open in IMG/M
3300012956|Ga0154020_10064795All Organisms → cellular organisms → Bacteria → Proteobacteria3720Open in IMG/M
3300014305|Ga0075349_1089114Not Available670Open in IMG/M
3300014312|Ga0075345_1090642Not Available680Open in IMG/M
3300014317|Ga0075343_1082023All Organisms → cellular organisms → Bacteria707Open in IMG/M
3300014319|Ga0075348_1028699All Organisms → cellular organisms → Bacteria → Proteobacteria1198Open in IMG/M
3300015240|Ga0182876_10000655All Organisms → cellular organisms → Bacteria → Proteobacteria2481Open in IMG/M
3300022214|Ga0224505_10235571Not Available697Open in IMG/M
3300023174|Ga0214921_10145898All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium 4572_191622Open in IMG/M
3300025106|Ga0209398_1007685All Organisms → cellular organisms → Bacteria → Proteobacteria3815Open in IMG/M
3300025130|Ga0209594_1135439All Organisms → cellular organisms → Bacteria734Open in IMG/M
3300025130|Ga0209594_1156786Not Available674Open in IMG/M
3300025866|Ga0208822_1219879Not Available677Open in IMG/M
3300025950|Ga0210134_1002873All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium2576Open in IMG/M
3300026072|Ga0208292_1056121Not Available517Open in IMG/M
3300026485|Ga0256805_1050886Not Available547Open in IMG/M
3300027683|Ga0209392_1003568All Organisms → cellular organisms → Bacteria → Proteobacteria4369Open in IMG/M
3300027683|Ga0209392_1252974Not Available524Open in IMG/M
3300027705|Ga0209063_1099857All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium1030Open in IMG/M
3300027715|Ga0208665_10152112All Organisms → cellular organisms → Bacteria → Proteobacteria724Open in IMG/M
3300027721|Ga0209492_1034522All Organisms → cellular organisms → Bacteria1768Open in IMG/M
3300027723|Ga0209703_1126680Not Available969Open in IMG/M
3300027739|Ga0209575_10309323Not Available544Open in IMG/M
3300027781|Ga0209175_10439538Not Available541Open in IMG/M
3300027823|Ga0209490_10068581All Organisms → cellular organisms → Bacteria → Proteobacteria2688Open in IMG/M
3300027885|Ga0209450_10001838All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales10699Open in IMG/M
3300027885|Ga0209450_10047707All Organisms → cellular organisms → Bacteria → Proteobacteria2632Open in IMG/M
3300027885|Ga0209450_10065011All Organisms → cellular organisms → Bacteria → Proteobacteria2308Open in IMG/M
3300027885|Ga0209450_10327704All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1110Open in IMG/M
3300027885|Ga0209450_10369679All Organisms → cellular organisms → Bacteria → Proteobacteria1043Open in IMG/M
3300027890|Ga0209496_10060666All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquincola → Aquincola tertiaricarbonis1481Open in IMG/M
3300027897|Ga0209254_10001829All Organisms → cellular organisms → Bacteria → Proteobacteria19195Open in IMG/M
3300027897|Ga0209254_10045713All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria3844Open in IMG/M
3300027897|Ga0209254_10068469All Organisms → cellular organisms → Bacteria3043Open in IMG/M
3300027897|Ga0209254_10097856All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pleurocapsales → Xenococcaceae → Xenococcus → unclassified Xenococcus → Xenococcus sp. PCC 73052467Open in IMG/M
3300027897|Ga0209254_10102293All Organisms → cellular organisms → Bacteria2402Open in IMG/M
3300027897|Ga0209254_10105938All Organisms → cellular organisms → Bacteria2353Open in IMG/M
3300027897|Ga0209254_10123503Not Available2147Open in IMG/M
3300027897|Ga0209254_10180519All Organisms → cellular organisms → Bacteria → Proteobacteria1703Open in IMG/M
3300027897|Ga0209254_10304593Not Available1218Open in IMG/M
3300027897|Ga0209254_10306489All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1213Open in IMG/M
3300027897|Ga0209254_10484488Not Available897Open in IMG/M
3300027897|Ga0209254_10535275Not Available839Open in IMG/M
3300027897|Ga0209254_10540767Not Available834Open in IMG/M
3300027897|Ga0209254_10579349Not Available795Open in IMG/M
3300027897|Ga0209254_10651299All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium734Open in IMG/M
3300027897|Ga0209254_10894192Not Available591Open in IMG/M
3300027897|Ga0209254_10957315Not Available562Open in IMG/M
3300027900|Ga0209253_10167835All Organisms → cellular organisms → Bacteria → Proteobacteria1768Open in IMG/M
3300027900|Ga0209253_10169146All Organisms → cellular organisms → Bacteria → Proteobacteria1761Open in IMG/M
3300027900|Ga0209253_10252836All Organisms → cellular organisms → Bacteria → Proteobacteria1386Open in IMG/M
3300027900|Ga0209253_10269684Not Available1332Open in IMG/M
3300027900|Ga0209253_10433364All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → Pseudoxanthomonas winnipegensis993Open in IMG/M
3300027900|Ga0209253_10853932All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → Ideonella sakaiensis642Open in IMG/M
3300027900|Ga0209253_10876644Not Available631Open in IMG/M
3300027902|Ga0209048_10017752All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales6231Open in IMG/M
3300027902|Ga0209048_10064207All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales2936Open in IMG/M
3300027902|Ga0209048_10217903All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1378Open in IMG/M
3300027902|Ga0209048_11001523Not Available534Open in IMG/M
3300027975|Ga0209391_10021664All Organisms → cellular organisms → Bacteria → Proteobacteria3272Open in IMG/M
3300027975|Ga0209391_10039736Not Available2280Open in IMG/M
3300027975|Ga0209391_10128195Not Available1102Open in IMG/M
3300027975|Ga0209391_10203837All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. OV329820Open in IMG/M
3300027975|Ga0209391_10224251Not Available771Open in IMG/M
3300027975|Ga0209391_10273215Not Available678Open in IMG/M
3300028108|Ga0256305_1093201Not Available730Open in IMG/M
3300028647|Ga0272412_1414989Not Available531Open in IMG/M
3300028804|Ga0268298_10073647Not Available2120Open in IMG/M
3300031784|Ga0315899_10776498All Organisms → cellular organisms → Bacteria → Proteobacteria880Open in IMG/M
3300031873|Ga0315297_11395006Not Available569Open in IMG/M
3300032156|Ga0315295_10193093All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. PS1(2021)2042Open in IMG/M
3300032164|Ga0315283_10401726All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1490Open in IMG/M
3300032256|Ga0315271_10070226All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2589Open in IMG/M
3300032397|Ga0315287_10846534Not Available1073Open in IMG/M
3300032397|Ga0315287_12547345All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales548Open in IMG/M
3300032456|Ga0335394_10260760All Organisms → cellular organisms → Bacteria → Proteobacteria1602Open in IMG/M
3300032516|Ga0315273_11098311All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter1010Open in IMG/M
3300033413|Ga0316603_10183443Not Available1766Open in IMG/M
3300033413|Ga0316603_10301950All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium GJ-E101414Open in IMG/M
3300033414|Ga0316619_12107497All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300033416|Ga0316622_100038559All Organisms → cellular organisms → Bacteria → Proteobacteria4380Open in IMG/M
3300033416|Ga0316622_102237651All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → unclassified Candidatus Accumulibacter → Candidatus Accumulibacter sp. SK-11633Open in IMG/M
3300033419|Ga0316601_102109941Not Available568Open in IMG/M
3300033483|Ga0316629_10775281Not Available734Open in IMG/M
3300033487|Ga0316630_11046434Not Available716Open in IMG/M
3300033488|Ga0316621_10820327Not Available682Open in IMG/M
3300033557|Ga0316617_100644631All Organisms → cellular organisms → Bacteria → Proteobacteria991Open in IMG/M
3300034018|Ga0334985_0354575All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales896Open in IMG/M
3300034066|Ga0335019_0046043All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2992Open in IMG/M
3300034108|Ga0335050_0007021All Organisms → cellular organisms → Bacteria → Proteobacteria7627Open in IMG/M
3300034125|Ga0370484_0125126Not Available681Open in IMG/M
3300034283|Ga0335007_0147582All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1686Open in IMG/M
3300034284|Ga0335013_0154394All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1558Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment21.29%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment16.13%
Anaerobic Digestor SludgeEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge9.68%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil6.45%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment4.52%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater3.23%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands3.23%
Wastewater EffluentEngineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent3.23%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater3.87%
FreshwaterEnvironmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater2.58%
WetlandEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland1.94%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands1.94%
Activated SludgeEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge1.94%
Activated SludgeEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge1.94%
FreshwaterEnvironmental → Aquatic → Freshwater → Pond → Sediment → Freshwater1.29%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.29%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)1.29%
Mangrove SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment1.29%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface1.29%
Hydrocarbon Resource EnvironmentsEngineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments1.29%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake0.65%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.65%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.65%
Microbial MatEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Microbial Mat0.65%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.65%
SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment0.65%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater0.65%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.65%
WetlandEnvironmental → Aquatic → Marine → Wetlands → Sediment → Wetland0.65%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.65%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.65%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.65%
SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sand0.65%
WastewaterEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater0.65%
Active SludgeEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge0.65%
Active SludgeEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge0.65%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000558Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011EngineeredOpen in IMG/M
3300001213Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)EnvironmentalOpen in IMG/M
3300001592Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - Microbes in water sample from Medicine Hat oil field -PW_MHGC_2012April2:EngineeredOpen in IMG/M
3300004048Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D2EnvironmentalOpen in IMG/M
3300005565Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel7S_1600h metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005656Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB19-KitEngineeredOpen in IMG/M
3300005833Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBKEnvironmentalOpen in IMG/M
3300005940Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_25-Nov-14EnvironmentalOpen in IMG/M
3300005982Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 8/11/14 A brown DNAEngineeredOpen in IMG/M
3300005986Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 6/11/14 C2 DNAEngineeredOpen in IMG/M
3300005987Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 B DNAEngineeredOpen in IMG/M
3300006056Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 10/23/14 1A DNAEngineeredOpen in IMG/M
3300006930Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWCEnvironmentalOpen in IMG/M
3300007202Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Monthly Sampling-Site C) 9 sequencing projectsEnvironmentalOpen in IMG/M
3300007521Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01EnvironmentalOpen in IMG/M
3300009075Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015EnvironmentalOpen in IMG/M
3300009078Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015EnvironmentalOpen in IMG/M
3300009111Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1EnvironmentalOpen in IMG/M
3300009131Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1EnvironmentalOpen in IMG/M
3300009166Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015EnvironmentalOpen in IMG/M
3300009167Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)EnvironmentalOpen in IMG/M
3300009169Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015EnvironmentalOpen in IMG/M
3300009170Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015EnvironmentalOpen in IMG/M
3300009171Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015EnvironmentalOpen in IMG/M
3300009430Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Big SpringEnvironmentalOpen in IMG/M
3300009455Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Crystal SpringEnvironmentalOpen in IMG/M
3300009509Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_11EnvironmentalOpen in IMG/M
3300009648Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC125_MetaGEngineeredOpen in IMG/M
3300009654Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR3_MetaGEngineeredOpen in IMG/M
3300009668Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC073_MetaGEngineeredOpen in IMG/M
3300009696Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC10_MetaGEngineeredOpen in IMG/M
3300009771Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC032_MetaGEngineeredOpen in IMG/M
3300009782Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC048_MetaGEngineeredOpen in IMG/M
3300009870Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plantEngineeredOpen in IMG/M
3300009873Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plantEngineeredOpen in IMG/M
3300010334Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010345AD_JPNAca2EngineeredOpen in IMG/M
3300010351AD_USPNcaEngineeredOpen in IMG/M
3300010355AD_USDVcaEngineeredOpen in IMG/M
3300010357AD_USSTcaEngineeredOpen in IMG/M
3300010412Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10EnvironmentalOpen in IMG/M
3300012533Active sludge microbial communities from wastewater in Klosterneuburg, Austria - KNB2014incub_MGEngineeredOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300012956Active sludge microbial communities from wastewater, Klosterneuburg, Austria - Klosneuvirus_20160825_MGEngineeredOpen in IMG/M
3300014305Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D1EnvironmentalOpen in IMG/M
3300014312Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D1EnvironmentalOpen in IMG/M
3300014317Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D1EnvironmentalOpen in IMG/M
3300014319Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D1EnvironmentalOpen in IMG/M
3300015240Freshwater microbial mat microbial communities from Canadian High Arctic Lake 9K, Kuujjuarapik, Canada - Sample L9KcEnvironmentalOpen in IMG/M
3300022214Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_4_1EnvironmentalOpen in IMG/M
3300023174Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505EnvironmentalOpen in IMG/M
3300025106Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Big Spring (SPAdes)EnvironmentalOpen in IMG/M
3300025130Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Crystal Spring (SPAdes)EnvironmentalOpen in IMG/M
3300025866Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_STIC08_MetaG (SPAdes)EngineeredOpen in IMG/M
3300025950Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300026072Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300026485Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 F6EnvironmentalOpen in IMG/M
3300027683Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027705Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB19-Kit (SPAdes)EngineeredOpen in IMG/M
3300027715Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC (SPAdes)EnvironmentalOpen in IMG/M
3300027721Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027723Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027739Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Medium cellulose week 11 (SPAdes)EnvironmentalOpen in IMG/M
3300027781Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 C2 DNA (SPAdes)EngineeredOpen in IMG/M
3300027823Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-06 (SPAdes)EnvironmentalOpen in IMG/M
3300027841Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11 (SPAdes)EnvironmentalOpen in IMG/M
3300027885Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)EnvironmentalOpen in IMG/M
3300027890Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300027897Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)EnvironmentalOpen in IMG/M
3300027900Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)EnvironmentalOpen in IMG/M
3300027902Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)EnvironmentalOpen in IMG/M
3300027975Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015 (SPAdes)EnvironmentalOpen in IMG/M
3300028108Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028647Metatranscriptome of activated sludge microbial communities from WWTP in Nijmegen, Gelderland, Netherland - WWTP Weurt (Metagenome Metatranscriptome)EngineeredOpen in IMG/M
3300028804Activated sludge microbial communities from WWTP in Nijmegen, Gelderland, Netherland - WWTP WeurtEngineeredOpen in IMG/M
3300031784Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112EnvironmentalOpen in IMG/M
3300031873Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0EnvironmentalOpen in IMG/M
3300032156Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0EnvironmentalOpen in IMG/M
3300032164Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0EnvironmentalOpen in IMG/M
3300032256Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_topEnvironmentalOpen in IMG/M
3300032397Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0EnvironmentalOpen in IMG/M
3300032456Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-03 (spades assembly)EnvironmentalOpen in IMG/M
3300032516Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0EnvironmentalOpen in IMG/M
3300033413Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCTEnvironmentalOpen in IMG/M
3300033414Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_BEnvironmentalOpen in IMG/M
3300033416Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_CEnvironmentalOpen in IMG/M
3300033419Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCTEnvironmentalOpen in IMG/M
3300033483Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_AEnvironmentalOpen in IMG/M
3300033487Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_AEnvironmentalOpen in IMG/M
3300033488Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_CEnvironmentalOpen in IMG/M
3300033557Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_BEnvironmentalOpen in IMG/M
3300034018Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021EnvironmentalOpen in IMG/M
3300034066Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087EnvironmentalOpen in IMG/M
3300034108Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Jun2014-rr0157EnvironmentalOpen in IMG/M
3300034125Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15EnvironmentalOpen in IMG/M
3300034283Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061EnvironmentalOpen in IMG/M
3300034284Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Draft_1173033333300000558Hydrocarbon Resource EnvironmentsMLVLSTLTAKMTVKVCEAAAGALQINSLKSSLMIEWE*
JGIcombinedJ13530_10211659933300001213WetlandMLVLRTLTAKMTVKVCEAAAGASRINSLEGSLMIEWE*
Draft_1001755663300001592Hydrocarbon Resource EnvironmentsMLVPDKLTVRMTVKTREAAASFLQINRLESSLMIEWE*
Ga0055494_1001371323300004048Natural And Restored WetlandsPAPMLVLRTLTAKVTVNFCGAASGALQSNSLEGSLMIEWE*
Ga0068885_148920213300005565Freshwater LakeMLVLRTLTVNMTVNFCRAASGALQINSLEGSLMIEWE*
Ga0073902_1023044523300005656Activated SludgeMLVPDTLTVKMTVKIERATCKHLEINSLEGSLMIEWE*
Ga0073902_1029363313300005656Activated SludgeMLVLDRLTVNMTVKVCGAAAIALRINSLEGSLMIEWE*
Ga0074472_1073477423300005833Sediment (Intertidal)MLVPDRLTAKVTAKICEAASSALPINGLVRSLTIEWEEGPQW*
Ga0074472_1115195133300005833Sediment (Intertidal)MLVLSTLKVEMTVKVCEAAASTLQINSLEGSLMIEWE*
Ga0073913_1002118023300005940SandMLVPSTLTVKVTAKVFEEAARNLQINNLEGWLMIERE*
Ga0075156_1004802123300005982Wastewater EffluentMLVPDTLTVKMTVKIERATCKHFEINSLEGSLMIEWE*
Ga0075152_1001261053300005986Wastewater EffluentMLVPDTLTVKMTVKIERATCKHFEINSLEGPLMIEWAK*
Ga0075158_1034018723300005987Wastewater EffluentMLVPDTLTVKMTVKIERATCKHFEINSLEGPLMIEWE*
Ga0075163_1016691123300006056Wastewater EffluentMLVLRTLTVKMTVNFGGAASGALQINSLEGSLMIEWE*
Ga0079303_1010213933300006930Deep SubsurfaceMLVPDRLTVKVTVKICKAAPGALPINNLEGSLMIEWE*
Ga0103274_111502543300007202Freshwater LakeMLVLGRLTVKMTVKVCGAATSDLQINSLEGSLMIEWE*
Ga0105044_1018602023300007521FreshwaterMLVPDTLTVKMAVKIDRTTWNHFEINSLDGSLMIEWE*
Ga0105044_1129839813300007521FreshwaterMLVHGTLTVKMTVKVDQETWNHFQINSLERSLTIEWE
Ga0105090_1000649013300009075Freshwater SedimentMLVPDRLTVKMTVKICEAASNALPINSLEGSLMIEWE*
Ga0105090_1016399943300009075Freshwater SedimentMLVPDRLTVRMTVKIREAVASTLQVNDLDGSLMIEWE*
Ga0105090_1024296113300009075Freshwater SedimentMLVPSASTVKVTVKVFEEAARTLQSNNLEGSLMIEWE*
Ga0105090_1032075233300009075Freshwater SedimentMLVSDRLTVKMTVKIFEAAASALRINSLEGSLMIEWE*
Ga0105090_1035055313300009075Freshwater SedimentMLVPDTLTVKVTVKIFEAAASALQINGLEGSLMIEWE*
Ga0105090_1043141823300009075Freshwater SedimentMLVPGTLTVNVTAKVLEAAASTLQINSLEGSLMIEWE*
Ga0105106_1008339333300009078Freshwater SedimentMLVPSTLTVKVTVKVFEEAARTLQINNGEGSLMIEWE*
Ga0105106_1015300323300009078Freshwater SedimentMLMPDELTVKVTVKGASPLMDALQINSLESSLMIEWE*
Ga0115026_1147221413300009111WetlandMLMPDGLTVNVTVKIWEAAATALQLNSLEGSLMSEWE*
Ga0115027_1128625923300009131WetlandMLVPGTLTVIVTVKVFEAAASALQINNLEGSLMIEWE*
Ga0105100_1003735333300009166Freshwater SedimentMLVPSTLTVKVTVKVFEEAARTLQINNVEGSLMIEWE*
Ga0113563_1155212113300009167Freshwater WetlandsAPMLVLDRFTVKMTVEVCEATSSALLINSLERSLMIEWE*
Ga0113563_1241673823300009167Freshwater WetlandsLVPGTLTVNVTVRICEAASGALPINNLEGSLMIEWE*
Ga0113563_1261158923300009167Freshwater WetlandsMLVPAGLTVKVTVKTLAPCSDARQINSLEGSLMIEWE*
Ga0105097_1086164213300009169Freshwater SedimentMLVPSTLTVKVTVKVFEEAARTLQINNLEGSLMIEWE*
Ga0105096_1004040633300009170Freshwater SedimentLGRLTVKVTVKVRVAVESAMKINGLKRSLMIEWE*
Ga0105096_1010779523300009170Freshwater SedimentMLVPDRLTKKMTVKIFEAAASALRTNSLEGSSMIEWE*
Ga0105096_1014442513300009170Freshwater SedimentPAPMLVPSASTVKVTVKVFEEAARTLQSNNLEGSLMIEWE*
Ga0105096_1064661913300009170Freshwater SedimentMLVPSTLTVKVTVEVFEEAAGTLQINNLEGSLMIEWE*
Ga0105101_1045605223300009171Freshwater SedimentMLVLRTLTVKTTVKRRDTAQSPMQINGLEASLMIEWE*
Ga0114938_100584723300009430GroundwaterMLVPGTLTVNVTVKVFEAAASTLQINNLEVSLMIEWE*
Ga0114939_1019412013300009455GroundwaterMLVLRTLTVKLTVNFCDAAASPLSINNLERSLMIEWE*
Ga0123573_1024477943300009509Mangrove SedimentMLMLDGLTAKVTVKFCETAASPLSINDLERSLMIEWE*
Ga0116175_124145613300009648Anaerobic Digestor SludgeMLVPDTLTVKMTVKVDHATWNHFEINSLDGSLMIEWE*
Ga0116167_101168053300009654Anaerobic Digestor SludgeMLVPNTLTVKMTVKIARATCKHFEINSLEGSLMIEWE*
Ga0116180_102804623300009668Anaerobic Digestor SludgeMLVPDTLTVKMTVKIDCAAWNHLEINSLDGSLMIEWE*
Ga0116177_10000416323300009696Anaerobic Digestor SludgeMLVRDTLTVKMTVKIERATCKHFEINSLEGSLMIEWE*
Ga0116155_1004990033300009771Anaerobic Digestor SludgeMLVPGTLTVNVTVKAFEAAASTLQINNLEGSLMIEWE*
Ga0116157_1014394823300009782Anaerobic Digestor SludgeMLVPDTLTVKMTVKIDRTTWNHFEINSLDCSLMIEWE*
Ga0116157_1018234723300009782Anaerobic Digestor SludgeMLVPDTLTVKMTVKIEISTWNHFEINSLEGLLMIEWE*
Ga0131092_10004129333300009870Activated SludgeMLVLRALTVKMTVNFYVAASGVLQINSLEGSLMIEWE*
Ga0131077_1173195113300009873WastewaterMLVLRTLTVKMTVKVCEAAASALQINSLEGSLMIEWE*
Ga0136644_1030744833300010334Freshwater LakeLRTLTVKMTVNFRGAASGALQINSLEGSLMIEWE*
Ga0074044_1086819813300010343Bog Forest SoilMLMRDRLTVRMTVKICMASASALRINSLEGSLMIEWE*
Ga0116253_1087231223300010345Anaerobic Digestor SludgeRKPAPMLVPDTLTVKMTVKIDRSTWKHFEINSLEGSLMIEWE*
Ga0116253_1095943413300010345Anaerobic Digestor SludgeMLVPDTLTVKMTVKIDRSTWKHFEINSLEGSLMIEWE*
Ga0116248_1022194223300010351Anaerobic Digestor SludgeMLVPDTLTVKMTVKIERATCKHFEINSLEGLLMIEWE*
Ga0116242_1058857123300010355Anaerobic Digestor SludgeMLVPDTLTVKMTVKSYRSIWKHFEINSLEGSLMIEWES*
Ga0116249_1127500723300010357Anaerobic Digestor SludgePAPMLVLRTLTVKMTVKVCGAAESALRINSLEGSLMIEWE*
Ga0116249_1137257223300010357Anaerobic Digestor SludgeKPAPMLVPGTLTVKMTVNIREAVSRTIQINSLEGLLMIEWE*
Ga0116249_1195645213300010357Anaerobic Digestor SludgeRKPAPMLVLRTLTVKMTVKVCGAAESALRINSLEGSLMIEWE*
Ga0136852_1018376223300010412Mangrove SedimentMLVLRTLTVKLTVKGCGTVASALRINSLEGSLMIEWE*
Ga0138256_1012938433300012533Active SludgeMLVPDTLTVKMTVKSERATCKHFEINSLEGSLMIEWE*
Ga0153915_1021642023300012931Freshwater WetlandsMLVPDRLTVKMTVKIRAAAASTLQINDVEGSLMIEWE*
Ga0154020_1006479553300012956Active SludgeMLVLRTLTVKMTVNFCGSTSGALQINSLEGSLMIEWE*
Ga0075349_108911413300014305Natural And Restored WetlandsMLVLRTLTAKVTVNFCGAASGALQSNSLEGSLMIECE*
Ga0075345_109064223300014312Natural And Restored WetlandsMLALRTLTVKVTVNFGGAASGALQINSLEGSLMIEWE*
Ga0075343_108202313300014317Natural And Restored WetlandsMLVPDRLTVKMTVEICEGVSGALQINSLEGSLMIEWE*
Ga0075348_102869933300014319Natural And Restored WetlandsMLVPDRLTVKMTVKVCDAAVSTLEINGLESSLMIEW
Ga0182876_1000065533300015240Microbial MatMLVPDRLTVIVTVNICDAAATALQINGSEGSLMIEWE*
Ga0224505_1023557113300022214SedimentKPAPMLAPDRLTVRMSVKVCEAASIPLRINSLEGSLMIEWE
Ga0214921_1014589833300023174FreshwaterMLVPDTLTVKMTVKSELATCKHFEINSLEGSLMIEWE
Ga0209398_100768523300025106GroundwaterMLVPGTLTVNVTVKVFEAAASTLQINNLEVSLMIEWE
Ga0209594_113543923300025130GroundwaterKPAPMLVPGTLTVNVTVKVFEAAASTLQINNLEVSLMIEWE
Ga0209594_115678623300025130GroundwaterMLVPGTLTVNVTVRVFEAASSTLQINNLEGSLMIEWE
Ga0208822_121987923300025866Anaerobic Digestor SludgeRKPAPMLVPDTLTVKMTVKIERATCKHFEINSLEGSLMIEWE
Ga0210134_100287333300025950Natural And Restored WetlandsLVPEMLTVKMTVKVCEAVSGALQINSLEGSLMIEWE
Ga0208292_105612113300026072Natural And Restored WetlandsMLALRTLTVKMTVNFGGAASGALQINSLEGSLMIEWE
Ga0256805_105088613300026485SedimentMLVPDRLTVKMTVKVCGAAASALRINSLEGSLTIEWVAFEIYRGL
Ga0209392_100356853300027683Freshwater SedimentMLVPSTLTVKVTVKVFEEAARTLQINNGEGSLMIEWE
Ga0209392_125297413300027683Freshwater SedimentMLVPDRLTKKMTVKIFEAAASALRTNSLEGSSMIEWE
Ga0209063_109985723300027705Activated SludgeMLVLDRLTVNMTVKVCGAAAIALRINSLEGSLMIEWE
Ga0208665_1015211223300027715Deep SubsurfaceMLVPDRLTVKVTVKICKAAPGALPINNLEGSLMIEWE
Ga0209492_103452233300027721Freshwater SedimentMLVPSTLTVKVTVKVFEEAARTLQINNLEGSLMIEWE
Ga0209703_112668013300027723Freshwater SedimentMLVPSTLTVKVTVKVFEEAARTLQINNVEGSLMIEWE
Ga0209575_1030932323300027739FreshwaterMLDLDGLTVKVTVKICEAEASAMKINSLEGSLMIEWE
Ga0209175_1043953813300027781Wastewater EffluentMLVLRTLTVKMTVNFGGAASGALQINSLEGSLMIEWE
Ga0209490_1006858123300027823FreshwaterMLVPDTLTAKMTVKVDQETWNHFQINSLERSLTIEWE
Ga0209262_1005013623300027841FreshwaterMRVLRTLTAKVTVKTLVPCSDATQINSLEGSLMIEWE
Ga0209450_1000183833300027885Freshwater Lake SedimentMLVPDKLTVIVTVKLRDTAWSAMQINGLEGSLMIEWE
Ga0209450_1004770723300027885Freshwater Lake SedimentMLALRTLTVKMTVNFGGAASGALQINSLEGSWMIEWE
Ga0209450_1006501133300027885Freshwater Lake SedimentMLVLCALTVKMTVKICGAASNHLRINSLEGSLMIE
Ga0209450_1032770423300027885Freshwater Lake SedimentMLMPDGLTARMTVKLSHAAQSAMQINGLDGSLMIEWE
Ga0209450_1036967923300027885Freshwater Lake SedimentMLVLSTLTVKMTVKVCEAAANTLRINSLEGSLMIEWE
Ga0209496_1006066613300027890WetlandMLVPDTLTVKVTVKIFEAAASALQINGLEGSLMIEWE
Ga0209254_1000182933300027897Freshwater Lake SedimentMLDLDRLTVKVTVRICEAEAGTLQINRLRGSLMFEWE
Ga0209254_1004571353300027897Freshwater Lake SedimentMRAPDRLTVKMTVKIFEAASSALPINSLERSLMIEWE
Ga0209254_1006846923300027897Freshwater Lake SedimentMLVPDRLTVKMTAKICEAAARSIRINSLEGSLMIEWE
Ga0209254_1009785633300027897Freshwater Lake SedimentMLVLSTLTAKMTVKVCVAAASTLQINSVEGSLMIEWE
Ga0209254_1010229333300027897Freshwater Lake SedimentMLVPDRLPAKMTAKICGAAASTLLINSLEGSLMIEWE
Ga0209254_1010593823300027897Freshwater Lake SedimentMLVLHRLTVKMTVKICETEAIDLRINILESPLMIEWE
Ga0209254_1012350323300027897Freshwater Lake SedimentRIVRKPAPMLVPDRLTVKVTVKIFEAAASSLQINNLECLLMIE
Ga0209254_1018051923300027897Freshwater Lake SedimentMLDLDGLTVKVTVKICEAEARAMEINSLEGSLMIEWE
Ga0209254_1030459313300027897Freshwater Lake SedimentMLVLRTSTAKMTANACGAAAGALQINSLEGSLMIEWE
Ga0209254_1030648913300027897Freshwater Lake SedimentMLVLSTLTVEMTVKVCEAAVKTLRINSLERSLMIEWE
Ga0209254_1048448813300027897Freshwater Lake SedimentMLVLGSLTVKVTAEVCKAAVSTLRINSLEGSLMIEWE
Ga0209254_1053527513300027897Freshwater Lake SedimentMLDLVGLTVKVTVKTCEAEASAMQINSFEGSLMIEWE
Ga0209254_1054076723300027897Freshwater Lake SedimentMLVPDRLTVKVTVKVFEVAAIALQINSLEGSLMIEWE
Ga0209254_1057934923300027897Freshwater Lake SedimentMLVLDRLTVKVTVTVWGAAAGALQINSLERSLMIEWE
Ga0209254_1065129923300027897Freshwater Lake SedimentMLMPARLTAKVTVKVCEEAASALQINGLEGLLMIEWE
Ga0209254_1089419213300027897Freshwater Lake SedimentMLVPGTLTVNVTVKIFGAAASALRINSLEGSLMIEWE
Ga0209254_1095731523300027897Freshwater Lake SedimentVLVLRTLTVKMTVKVCEATSSALPINSLEGSLMIEWE
Ga0209253_1016783523300027900Freshwater Lake SedimentMLVPDRLTAKTTVKICEAAASALQINSSEGSSMIEWE
Ga0209253_1016914613300027900Freshwater Lake SedimentMLVLRTLTVKMTAKSCDEPASALQINSLEGSLMIEWE
Ga0209253_1025283633300027900Freshwater Lake SedimentMLVPDRLTVKMTVKVCEAAYSAFQINGLERSLMIEWE
Ga0209253_1026968413300027900Freshwater Lake SedimentMLDLDGLTVKVTVKICEAEASAMQINSLEGSLMIEWE
Ga0209253_1043336423300027900Freshwater Lake SedimentMLMPHGLTVKVTVKICEAAASALSINSLEGSLMIEWE
Ga0209253_1085393233300027900Freshwater Lake SedimentIARIPPPMLMPDRLTVIVTVKTCDAALKAMKINDVEGSLMIEWE
Ga0209253_1087664413300027900Freshwater Lake SedimentMLVLSTLTVKTTVNVCEAAANTLQINSLEGSLMIEWE
Ga0209048_1001775213300027902Freshwater Lake SedimentMLVLSTLTVKMTVKICEAAASTLQINSLEGSLMIEWE
Ga0209048_1006420743300027902Freshwater Lake SedimentMLVLDRLTVKMTVKIREAVASTLQINDLDGSLTIEWE
Ga0209048_1021790323300027902Freshwater Lake SedimentMLVPDRLTVRMTAKIREAVASALQINDLDGSLMIEWE
Ga0209048_1100152313300027902Freshwater Lake SedimentMLVPDRLTVKVTVKVCVAAASALQINSLEGSLMIEWE
Ga0209391_1002166433300027975Freshwater SedimentMLVPSTLTVKVTVKVFEEAARTLQINNFEGSLMIEWE
Ga0209391_1003973613300027975Freshwater SedimentPAPMLVPSTLTVKVTVKVFEEAARTLQINNGEGSLMIEWE
Ga0209391_1012819513300027975Freshwater SedimentMLVPSASTVKVTVKVFEEAARTLQSNNLEGSLMIEWE
Ga0209391_1020383713300027975Freshwater SedimentKPAPMLVLRTLTVKMTAKVCEAASSALPINSLERSLMIEWE
Ga0209391_1022425123300027975Freshwater SedimentMPYGLTARVTVKTCEAAANALRINSVEGSLMIEWE
Ga0209391_1027321523300027975Freshwater SedimentMLVPEMLTVKMTVKVCEAVSGALQINSLEGSLMIEWE
Ga0256305_109320133300028108FreshwaterMLVPDTLTVKMTVKIARATCKHFEINSLEGSLMIEWE
Ga0272412_141498913300028647Activated SludgeMLVPDTLTVKMTVKIDRATWNHFEINSLGCSLMIEWE
Ga0268298_1007364723300028804Activated SludgeMLVPDTLTVKMTVKLDRATWKHFEINGLEGSLMIEWE
Ga0315899_1077649823300031784FreshwaterMLVLSTLTVDMTVKVCEAAVKTLRINSLERSLMIEWE
Ga0315297_1139500623300031873SedimentMLVLRTLTVKVTVNVCAAAASALRINSLEGSLMIEWV
Ga0315295_1019309323300032156SedimentMLVPDRLTVKMTVKICEAAASALLINSLEGSLMIEWE
Ga0315283_1040172633300032164SedimentKIARKPAPMLVLRTLTVKVTVNFCRAASGALQINSLEGLLMIEWE
Ga0315271_1007022643300032256SedimentMSEKVSRLVPDRLTAKMTVRICEAAVSALRINSLEGSLMIEWE
Ga0315287_1084653423300032397SedimentMLVPGTLTVNVTVKVFEAAASTLQSNNLEGSLMIEWE
Ga0315287_1254734513300032397SedimentMLVLNRLTVKMTVRIFEAAASALRINSLEGSLMIEW
Ga0335394_1026076023300032456FreshwaterMLVPDTLTVKMAVKIDRTTWNHFEINSLDGSLMIEWE
Ga0315273_1109831113300032516SedimentEPDRLTVKMTVNGCEASTSALPINDLVGSLMIEWE
Ga0316603_1018344313300033413SoilMLVPDRLTVKMTVKICDAAASTLNINSLEGSLMIEWE
Ga0316603_1030195013300033413SoilPAPMLVPDRLTVKMTVKVCEAGASTLQINSLEVSLMIEWE
Ga0316619_1210749723300033414SoilKPAPMLMPHGLTVIVTVTIYDAVTSALQINSLEGSWMIAWE
Ga0316622_10003855923300033416SoilMLVPAGLTVKVTVKTLAPCSDARQINSLEGSLMIEWE
Ga0316622_10223765113300033416SoilMLVLRTLTVKMTVKVCEAVVSTLKINSLEGSLMIEWE
Ga0316601_10210994113300033419SoilMLVPERLTVKVTVKRDDAAQRPMQINGLEGSLMIEWE
Ga0316629_1077528113300033483SoilAPMLVLRTLTVKMTVKVCEEAANTLRINSLEGSLMIEWE
Ga0316630_1104643413300033487SoilMLTPDRLTVKATVKIWGVAAGALQINSLEGSLVIEWE
Ga0316621_1082032723300033488SoilMLVPDRLTVKMSVRMVEAAASASQINNLEDSLMIEWE
Ga0316617_10064463133300033557SoilMLVPDRLTVEVTVKICKAAPGALPINSLEGSLMIEWE
Ga0334985_0354575_224_3373300034018FreshwaterMLVLSTLTVKMTVNVCEAAANTLQINSLEGSLMIEWE
Ga0335019_0046043_440_5533300034066FreshwaterMLVLRTLTAKMTVNFCRAASGALQINSLEGSLMIEWE
Ga0335050_0007021_7512_76253300034108FreshwaterMLVPDRLTVKVTEKVCVAAASALRIKSLEISLTIEWE
Ga0370484_0125126_387_5003300034125Untreated Peat SoilMLVPDRLTVKVTVDIFDAAVLALQINSLEGSLMIEWE
Ga0335007_0147582_1562_16843300034283FreshwaterPAPMLVPDRLTVKVTVKVCVAAASALRIKSLEISLTIEWE
Ga0335013_0154394_3_1253300034284FreshwaterPAPMLVPDRLTVKVTVKVCVAAASALRIKRLEISLTIEWE


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