3300015204: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G2B, Ice surface)

Overview

Basic Information

• IMG/M Taxon OID: 3300015204
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121480 | Gp0191509 | Ga0167626
• Sample Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G2B, Ice surface)
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Bristol
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 341656927
• Sequencing Scaffolds: 35
• Novel Protein Genes: 39
• Associated Families: 30

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
Not Available	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium → Cryobacterium ruanii	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Porifera → Demospongiae → Heteroscleromorpha → Haplosclerida → Niphatidae → Amphimedon → Amphimedon queenslandica	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Pontibacter → unclassified Pontibacter → Pontibacter sp. HSC-36F09	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Blastopirellula	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metagenomes Of Arctic Soils
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → glacial feature → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Russell Glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.163011
  • Long. (^o): -50.018445
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000362	Metagenome / Metatranscriptome	1231	Y
F008498	Metagenome / Metatranscriptome	332	Y
F019363	Metagenome / Metatranscriptome	230	Y
F023377	Metagenome / Metatranscriptome	210	Y
F026549	Metagenome / Metatranscriptome	197	Y
F028168	Metagenome	192	Y
F029055	Metagenome	189	Y
F030504	Metagenome / Metatranscriptome	185	Y
F032009	Metagenome / Metatranscriptome	181	Y
F035895	Metagenome / Metatranscriptome	171	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0167626_1000006	All Organisms → cellular organisms → Bacteria	126741
Ga0167626_1000661	All Organisms → cellular organisms → Bacteria → Proteobacteria	21595
Ga0167626_1002702	Not Available	10639
Ga0167626_1002774	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	10442
Ga0167626_1002905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis	10171
Ga0167626_1003056	All Organisms → cellular organisms → Bacteria	9900
Ga0167626_1003101	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	9816
Ga0167626_1005205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7176
Ga0167626_1005830	All Organisms → cellular organisms → Bacteria	6650
Ga0167626_1006126	All Organisms → cellular organisms → Bacteria	6450

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0167626_1000006	Ga0167626_1000006111	F050030	MALAGVRIAIGFTDRSSIMPKPSDDDPLAAFELPPDLMSSTFEHAISDHADLTHEQGHAVAAALQRLLAGSTVEYGFPGMVTARLKSGALAHCGGPSIGWMIDVQRKPGGSPVTVDVNVPSDETDPVRLAELLAKALRKY*
Ga0167626_1000661	Ga0167626_10006611	F000362	RPILNVMSKNLPPDLEVRVDPDEMVRYVHSLMTTPQTKGGSTIVALAERQWGGDTALARAAQLRWSALNRAFGDARVSSWTTYQKSNQIHVPAALIAAAGVARLTVAADEVVFDIPTLLDATLQLCEPAGYA*
Ga0167626_1001894	Ga0167626_10018941	F068639	MSDDKRNDLDPAAQVAAQLRARLRELQHEELTEMAAQLVTTYVLEGVLPLSRAGEATELAQDQVGEESFAQMLKRLKARKSDPLLERFLIDGENISVRIDGMGVLPITEYRRPNAPPPARGEQAVAQARRESVPGAATSIYNRGLYQPEAAPGPLA
Ga0167626_1002702	Ga0167626_10027021	F065203	MLDMRVTEWLTRLGGNAPRLVSLGLAALIAVELARALIILLSGSPVKS
Ga0167626_1002774	Ga0167626_10027746	F032009	MKKRLLIILMPLLLISYQCFTQTYISFSPALTNTAGNIADKSNIAFEIGRQWDVFSLGIALGKSTLSRVSGRDTSNYLEIRPNLNIFQQGKFTSTFTPGIGYIFQAKENLLTELTYGIEYSHTENLHYNVNFGQFFYSGKESASNVSFFSVSVAWFFTSNKAGALIKK*
Ga0167626_1002905	Ga0167626_100290510	F083559	MDIIPHTVREFGVEARKPGRAWEAAFNGPIQSWADAEAGQTLYGVTVRLSRLKDPVSRELYSTNLLFYMPEEAMHGMHNVYEMAHRFPFTRIRGPRTPIPLCPARVGRLWYDANPEGVIMEDLRLTPAALPDGRPGFYVTGQGYRGKVMFPDGRFVHDVGVYGGYLDTQERPGQLELQHLFGGIEFGATLTDDDEGRLLAELGEGVWVKGITGNAAEDMHVESYKNSVKLPCLDGRKTLIGARSMSDTKQIAYFESLSVDGLSGFRMGGVIDGLNHALGLQIWDRVHRVGLGSNFVPCPELDGYIGLIHVVLEKNNPDFPETLDAVHPGINEQYEGWVVWLMFDADGKPIIKACVRAITPDDVPAGYEGAGELFDTKRVAFPMSLYRIGECLSVGYGWGDRALFQADFDYQTVMALLSSHRRN*
Ga0167626_1003056	Ga0167626_10030561	F035895	QEPSHIYGFKGRVARRSTFPGMDTDNQGNRIAFGSPTTDYGFTQGEYFAGRSPQAGTFSPI*
Ga0167626_1003101	Ga0167626_10031016	F032009	MRNRLLSILIPLIFLSYRCWSQTYISFAPALTNTAGTIADKSNIALEVGKQWEVFSMGLAFGKTTLSKVTGKDTSNYLEIRPNLNIFQQGKFTNTFTAGIGYIFQAKENLLTELTYGIEYSLTEKLHFNANFGQYFYSGKESASNVSFFGISAVLFFKPEKPGSLIKQNK*
Ga0167626_1005205	Ga0167626_10052058	F026549	MFRTILLRLILPLIAASVVVAYVGLPYIERLLSEWFRSDVELRAQLVMHSTEDRISDLIAKGAEKGGDARLRAYLSKITTDERLLGILVCRVDGTLI
Ga0167626_1005830	Ga0167626_10058301	F083559	LNLETIIMNTAATTTEFSSPISEPFYDDFHVMEVIPHTIHEFGVEARKAGKSWEAAFNGPIQSFEEIATGQSAYAVTVRLSRLKDPVTRELFSTNLLFYMSHEEMSGMHNVYDMARKFPFTRIRGPRTLVPHCPPRDGRLWYDANPEGVIMEDLRLTPTTLPSGRLGFFVTGQGYRGKVTSPDGRFIHDVGVYGGYLDPLERPGQLELQHLFGGIEFAPYRAGGEENPLLTELGEDVWVKGIGENTLGLPSVTSYKNSVRLPSHDASQILIGARSMSETKQIAWFESRSADGLSGFRLGGVIDGLHRALGLQVWDRVHRVGLGSNFVDCPELGGFIGLIHIVMEKNNPAFPETLDPIHPGITEQYEGWLVWMTFDEKGVPTIKACVRAITPDDVPLGYCGAGELFDTKRVAFPMSLYRRGNALQAGYGWGDRALFQAEFDYETVTARLSKHCRN*
Ga0167626_1006126	Ga0167626_10061265	F083559	MNDCAVSDALTHPPSSRPPRPALVDLHILPHTIHEFGVEARKAGKSWEAAFNGPIQSWEDPETQQATYGVTVRLSRIKDPLTRELYSTNILFYLPEDAMHGMHNVYDMAQRFPFTRIRGPRTAPPLCPPRAGMLWYDANPEGVIMEDVRQSPAMLPDGRPGFFVTGQGYRGKVVLPDGLFIHDVGVYGGYLDPLERPAQLELQHLFGGIEFMPGKTGTQEDLFLTELGDGVWVKGIVGNAVDELHVESYKNSVRLPCPHAGKFLIGARSMSETKLLPYFESRDPNGLGSYALSGFVDCLPKAIGPDVWERVHRVGLGSNFIPSPEIGGHIGLIHVVLERNNPDYPETHDPSYPKIEEQYEGWVVWLDFDESGTPHVKSCLRALTPDDVPRCYQGAGELFDTKRVAFPISLYRIGDNLRVGYGWGDRALFQAEYDYQTVVRHLAA*
Ga0167626_1006495	Ga0167626_10064953	F076630	MQCRIVWIIGLGVLALGPLTACNVIAAKAVSGASDEIIDEQSGSTLSVVTKPLVFARERTDVAAHARDYATLVALELDQSGKYAYNLLLYRWSTVDRRMSPPPEDNTGKLQILAEGRTIELTPLERVPIGLAKRKELHTPEHGDVVTHAYAIDVATLKFIANSRVLSVRMPQETFDSPFSLWQDGRKELQGFLLRVGAP*
Ga0167626_1006553	Ga0167626_10065531	F029055	AQQPASQPGAPRRFGRFDLDQPLAQLGRLPELRACAAAFAAPSGHADCTLPPDAPDRLGLGRVQVAWEAGGTIIALRLLFDPTLSPALTDLEWQLTRGWGPPVLEQLRREKETKTFTLQWEDPEHRATLEASGNIAQPSRAVAVVLERRQLPLTGDLAGLHPRPFANMRLRWIRRIDWEGQPHALVWGSSLTPAQEAMGEAGASWGSQRGYVGLWRLEPATAQRPRRWRELWERTTGDEDDGLQRVLFVDARDITGDGTPDIEVELSCETCGATASELILKTVRAGKLVDLLAKRDLFRAQVEMQPLQIRIAEPQGDADEGSTVSTYAYDRGKGAFVLSREEHVGGKPLDDR*
Ga0167626_1007542	Ga0167626_10075421	F056237	TTGLCVRCGIRIPSARNRCLAFDKDKYLEPMFGNAGQARTNAAMLLMLIATTSSHT*
Ga0167626_1007770	Ga0167626_10077708	F083559	MDNVVQLQNTVGPSGSHRMDIIPHTVREFGVEARKAGKAWEAAFNGPIQSWPDAESGALTYGVTVRLSRMKDPVSRELYSTNILFYLPAGEMHGMHNVYDMAQRFPFTRIRGPRTSVPHCPQREGRLWYDANPEGVIMEDLRLTPAALPDGRPGFFVTGQGYRGKVMMPDGRFVHDVGVYGGYLDTEERPGQLELQHLFGGIEFGATFTDDDAGRMLAELGEGIWVKGITGNGAEGTHVESYKNSVKLPCLDGRKTLIGARSMSETKQIAYFESQSADGLSGFRMGGVIDGLNRALGLEIWDRVHRVGLGSNFVPCPELDGYIGLIHVVLEKNNPDYPETLDAVHPGINEQYEGWVVWLKFDADGRPVIEACVRAITPDDVPAGYEGAGELFDTKRVAFPMSLYRIGECLSVGYGWGDRALFQADFDYATVTAQLSSHGRS*
Ga0167626_1008976	Ga0167626_10089767	F045483	MAKPRRLVSGLSVLGFSLFVLTGCVVPGGYDVNSLHLQPEAALVYPGSTDVHTNYYNGSPGNYVSKGAVASIGNLATTIHTQLEVLAFFSKTVTADGWTQNGKSDQETTPEGLPASTISWGKQSLHLSYSVEAWTEGETTKYWTRISSDE*
Ga0167626_1012281	Ga0167626_10122811	F083559	MNTAVSCLDTLNYLTDSMAIIPHTVREFGVEARKEGRAWEAAFNGPIQSWLDAETEQMTYGVTVRLSRLKDPVTRELFSTNLLFYFAEAEMHGIHNVYDMARTLPFTRIRGPRTPVPVCPARVGRLWYDANPEGVIMEDLRLTPTTLPEGGTGFFVTGQGYRGKVMLPDGRFIHDVGVYGGYLDPAERPRQLELQHLFGGIEFGTMTDDRLLTELGEGVWVRGIAESAAGSPHVESYKNSVRLPSADSRRTVIGARSMSETKQIAYFESRSADGLSGFRLGGVIDGLHRALGLQIWDRVHRVGLGSNFVECPELGGYIGLIHVVLEKNNPDFPETLDPAHPGIDEQYEGWVVWLTLDADGVPSIKACVRAITPDDVPTEYQGRGELFDTKRVAFPISLYRTGDALQVGYGWGDRALFQAEFEYGVVIDQLFRRSLK*
Ga0167626_1014757	Ga0167626_10147572	F066535	MFITQPQVITPPTLVDGPVLTLGTAASCIPTNSKITLPNNYWYPGRKWRMTSWGRVSSAITTPGTARFDLRIGGVIAWDSQAVLLDTVAAHTNVGWKLVLELTCRSVGSGTATTLVGSGMWISEDILGVPATAPKGVLVAILPWNTTPGVPGTGFDNTLATNTVDLFFTQTAATGSLTVHDYMIEEMN*
Ga0167626_1019957	Ga0167626_10199576	F030504	ANGNIVPIDIEVSGVTDLRVFADLQTYLESLTFISHVSVQSLSGDTVNFRLTSRGGTEAVQHALALSGRLQSSPPGENGMQRYQLRR*
Ga0167626_1040638	Ga0167626_10406381	F045483	MAKPRRLFFGLSVLGISLLLLTGCVVPGGYDVNTLHLLPESGLIYPGSTDVHTNNYGGSPGNYVSKGAVAVTGKSATTVQTQLEVLAYFSQNLAAGGWTQTRTDDTATTPEGFRAKDISWVKNSLHLSYLVRTWTVGETTQYFTLLSANE*
Ga0167626_1041434	Ga0167626_10414341	F077506	MIDLSERTRRISGSRLLDILQQYDAKSVIDPFMGYPTHLNFLKRHGISVHGGDLVDWFVRAGEGLVVNDLTILRDSEVAEIVEMLPGRIYPMDMFKGWDGVFFTEEQCIYLGVWHSNVHNLRSDGQTGLAIAGLWHVLCYWLQKSKYPDDMADIPPSELAWHYIRETEHLVTQN
Ga0167626_1043505	Ga0167626_10435053	F084370	MDMDGVELELVCPCGFENFERVVVNRRPNSPVVTDFVACVGCKAMYFAPVRALDPPESRPGHEMRGIGGPEKPDTAEALKRDAAEAAKDYRKPGRPAQR*
Ga0167626_1044269	Ga0167626_10442693	F046787	MSDSDKPLRQQIDEGMEAIRHQLEQLRAGPTLGEPSNDLTVIAELEAEYQALKEARTGLGPHDR
Ga0167626_1051301	Ga0167626_10513013	F104247	MPSTPSPLRLYPTEAAAKKAGLALADYRGERLTTVLYALLPEDEKKPTYLLGSSIRLTVAEKRWVEEHQATVTKLGTFYPGRNFAPLQTNMVRKQKQVEQE*
Ga0167626_1053207	Ga0167626_10532071	F050725	HLLRTCPPDLLQEALVKFDDHFQNMIAEILRVPCLTDDVWEQASLPVKLAGLGVNKTNVIAGPAYVGSCCLTKDLVAALLKQDSSSFEPFDVKELLAAHEVATGITHELSALSDTKKVQHMLSSECHEAIFKRLKSKLGVRSHNLMLACSMSHASDWLLAPPIPGLGLSLQSDCFRTALKFRLSMPLFDKPFPCPAVSTGSGAVCDAQMDVFGDHALCCHNTSSLGFRHNNIRDILGHSARAAGLAAVAIEKKNQIDGSNARPGDITVQQYHRGFASTAFDITITHPLQKKFIEIAMEEAGVVAQEAHDRKLKKSLEVCQKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACDRAL*
Ga0167626_1060530	Ga0167626_10605302	F019363	MAHFGWSKTETIDQVHGIGPFTSTVIDAVYELNEKGVFLLTSLLLPGTPTTSNPPDCFPLKVGAKARSERGQGIIIGARCSPYNELTQYWIRKPNGDRFWATIQELRTR*
Ga0167626_1069697	Ga0167626_10696972	F028168	MIEKTTIELISQITEFNDIKEFMQDEDLDEALALIIKLIAKPHVNAMQVPDLINKMQSLAAKFAVMSRFYTTFEKGGDSSKKKNVYYTAEDAINKIVDALKYSARYGV*
Ga0167626_1072866	Ga0167626_10728662	F056237	MAHNDRALCRCGIRIPSAQNHCPAFDKDKYLEPMFGDVGQARTNAAILLMLIATTSSRICTKPIVVCRFILATTLFHLSNF
Ga0167626_1075164	Ga0167626_10751641	F040969	MTQPQWLSLGLLGHAKPVFEEGGLRTIEAADNTVVGIPRDGTGHHLLGTAASREEAVVIATILRLYNPS*
Ga0167626_1089879	Ga0167626_10898791	F057994	MALRTPPSFLQNGSHPAEQDRLTTQGLFRTSGILSAADLAVTQSTVPAMSVQIALGWGNIIGTTQANMG
Ga0167626_1091153	Ga0167626_10911532	F064358	MLCFSCSKQRESLYPVKSALLKGVDLFLCQTCIDSKLEPRWVIILAGRQNGSEYIRDYIIKNRYIGKKIMAEEIVA*
Ga0167626_1091891	Ga0167626_10918912	F023377	MVASLAFVGIAAQAMTVSYQCTGRRLLTAELSPRQGQLHFEGKDWTVTRVPGGREARYLNKKAGVEVVTQGRTMTFTHDGEALQCYLYSDALPGDAPRKTN*
Ga0167626_1095975	Ga0167626_10959752	F035895	MDTDNQGNRIAFGSPTTDYGFTQDEYFAGRSPQADTFSP
Ga0167626_1098329	Ga0167626_10983291	F008498	MASVTYKNQPAINKTKGKVPLAGTSHIYRVEKKLWNDSIEDVLKGLFIGKTLHVCCGKSLLGDIRLDADILNNPDIICDASNMKDFVKDNEFDTVICDPPYNGNFQWNHDLLTELARVSSKRIIFQHWFIPANPAGTYKKAQEKFMLSDVLVWQPKTYFGRVQVVSVFDSIL*
Ga0167626_1099925	Ga0167626_10999252	F076557	LQRACPSTESAHLIALDMTTSLLRFDGPSQQSRIQLVRLLKEFPQVLFQERAASEYEVTAADEAALRALAIKPGWSLIRNQ*
Ga0167626_1122186	Ga0167626_11221861	F045483	ANPRRLFSGLSVLGLSLFVLTGCVVPGGYDVNSLHLLPESGLVYPGSTGVHTNNYGGSPGNYVSKGAVAVTGKSAITTHTQLEVLAYFSRTLAADGWKQTQEDVRAATPEGLPAHWVAWDKPKLHLSYFVEVWTVGEATKYYTQFGSNE*
Ga0167626_1122963	Ga0167626_11229631	F100817	SAHMIATLPSQQRIDEIATELAPDVVRIRSNVAPDWSEHPAIYIRVLLADDASLGDRLADVTGRIGTKLFEELGLASLDHIPYFRFRSQSEQARLKDAA*
Ga0167626_1128838	Ga0167626_11288381	F069623	MEEMTPEIDTTQRVFALQHLDTGEYICLMQEGTDYLACFSDGDSALEFRALLGLQEHVDLRATTLDHSPFQHFWLDGESIALRQ
Ga0167626_1130460	Ga0167626_11304601	F056874	REYVGPYGFPVDLPFVGNELSFTALAERYAPNVSPEIVLQELIRMEAVKEVGNQVWKPLKQEFIDPTLNPENLKRMASLVESVLATLENNTRGAQDGEDLFERTTIVDLPLTRSQLHALQAFLKVVGGQFMQRVDSFSAVDLQRQDPIRVGEVANLRAGVQCFLYVEPKPDWTNSRAGIDFKVN*