3300015198: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G2A, Ice surface)

Overview

Basic Information

• IMG/M Taxon OID: 3300015198
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121480 | Gp0191508 | Ga0167625
• Sample Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G2A, Ice surface)
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Bristol
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 325818814
• Sequencing Scaffolds: 35
• Novel Protein Genes: 38
• Associated Families: 30

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	4
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
Not Available	9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium pictum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metagenomes Of Arctic Soils
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → glacial feature → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Russell glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.162953
  • Long. (^o): -50.018269
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005003	Metagenome / Metatranscriptome	415	Y
F007576	Metagenome / Metatranscriptome	348	Y
F011929	Metagenome / Metatranscriptome	285	Y
F012472	Metagenome / Metatranscriptome	280	Y
F014178	Metagenome / Metatranscriptome	265	Y
F016828	Metagenome / Metatranscriptome	244	Y
F018530	Metagenome / Metatranscriptome	234	Y
F019707	Metagenome / Metatranscriptome	228	Y
F023377	Metagenome / Metatranscriptome	210	Y
F029384	Metagenome	188	Y
F034944	Metagenome / Metatranscriptome	173	Y
F040670	Metagenome / Metatranscriptome	161	Y
F040969	Metagenome	160	Y
F045483	Metagenome	152	N
F046195	Metagenome	151	Y
F054765	Metagenome	139	Y
F056237	Metagenome	137	Y
F056330	Metagenome / Metatranscriptome	137	Y
F068258	Metagenome / Metatranscriptome	125	Y
F069623	Metagenome / Metatranscriptome	123	Y
F070459	Metagenome / Metatranscriptome	123	Y
F073235	Metagenome / Metatranscriptome	120	Y
F074174	Metagenome / Metatranscriptome	120	Y
F081567	Metagenome / Metatranscriptome	114	Y
F083559	Metagenome	112	Y
F085356	Metagenome / Metatranscriptome	111	Y
F085791	Metagenome / Metatranscriptome	111	Y
F092148	Metagenome	107	Y
F101697	Metagenome	102	Y
F104247	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0167625_1000161	All Organisms → cellular organisms → Bacteria → Proteobacteria	42160
Ga0167625_1001120	All Organisms → cellular organisms → Bacteria	18256
Ga0167625_1001789	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	14089
Ga0167625_1002954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	10550
Ga0167625_1005414	All Organisms → cellular organisms → Bacteria	6923
Ga0167625_1006655	Not Available	5987
Ga0167625_1007259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	5626
Ga0167625_1009552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4603
Ga0167625_1012220	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3827
Ga0167625_1016827	Not Available	2983
Ga0167625_1017672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	2875
Ga0167625_1019978	Not Available	2610
Ga0167625_1022742	Not Available	2360
Ga0167625_1024986	All Organisms → cellular organisms → Bacteria	2189
Ga0167625_1029689	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1914
Ga0167625_1030669	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1865
Ga0167625_1038812	Not Available	1553
Ga0167625_1040867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1491
Ga0167625_1046931	All Organisms → cellular organisms → Bacteria → Proteobacteria	1338
Ga0167625_1048896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	1295
Ga0167625_1051685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium pictum	1241
Ga0167625_1058338	All Organisms → cellular organisms → Bacteria	1130
Ga0167625_1070897	All Organisms → cellular organisms → Bacteria → Proteobacteria	970
Ga0167625_1072654	Not Available	952
Ga0167625_1076423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	914
Ga0167625_1092846	All Organisms → cellular organisms → Bacteria → Proteobacteria	777
Ga0167625_1102922	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	708
Ga0167625_1109240	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	669
Ga0167625_1110205	Not Available	664
Ga0167625_1112147	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	653
Ga0167625_1114850	All Organisms → cellular organisms → Bacteria	637
Ga0167625_1116103	Not Available	630
Ga0167625_1122140	Not Available	598
Ga0167625_1127775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	568
Ga0167625_1129023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis	562

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0167625_1000161	Ga0167625_100016125	F011929	LAASIEIIYLRFPVHPNITVIQIGPGIARIDKEGDSYFVIGTEDGPLAGKKVEIPVDNVAAVQWTLGETQAAPAAAT*
Ga0167625_1001120	Ga0167625_10011201	F007576	MGDNPEDRVAEFESIWYEVVEAVNAGRTSGLVCPECQHPDGLQVEESQGRVSVSCPNCKRLVEVGIATA*
Ga0167625_1001789	Ga0167625_10017896	F056237	LCRCGIRIPSARNRCLAFDKDKYLKPMFGDVGQARTKAAMLLLMIATTLSRTCTKPTVVRLCFFGWSIIRLIK*
Ga0167625_1002954	Ga0167625_10029542	F012472	MQSVRFVAETVGKSVNRLQEAFGDPRKVDTTPTRQVYVWFLPATPPGAPVGLHGCEMEVTVEPRSQQVLGYSMTSIGWSKCGEVERRIRII*
Ga0167625_1005414	Ga0167625_10054147	F074174	MIDLSERTRRISGSRLIEILQQYDAKSVIDPFMGYPAHLNFLKRHGISVHGGDLVDWFVRAGEGMVVNDLTILRDNEVAEIVEMLPGRIYPMDLFKGWDGVFFTEEQCIYLGVWHSNVHNLRSDGQTGLAIAGLWHVLCYWLQKSKYQDDMADIPPSELAWHYIRETERLVTQNALRNTVRRGDFNATLAATTADAVFIAPPGRNAHKKADARIWMWEAWWQGDPYLDIERYYRDTIFVQRTNEDSSYDRALGAVFAAAESAPLIILQTTLQNAAHFKALMHDFRPHIEIISPHADETYVVGRR*
Ga0167625_1006655	Ga0167625_10066555	F018530	MSSTLQGIPGMSQPFRDFVQMTRLYMRDFPELNRLVAGEESSDRQIAWAVMDALADFNGTPPFIGNFTLEGLLGSQQHSLLLRMTVITVIESVGLLQTRNHLNYSNGGITVGVNDKTPMLMNWLQYFKATTEQMKQRVKVAFNIGSILGSQNSGVHSELWSVNATYAAF*
Ga0167625_1007259	Ga0167625_10072594	F045483	LSLLLLTGCVVPGGYDVNSLHLLPESALVYPGSTGVHTNNYGGSPGNYVSKGAVAVTGKSATTVHTQQEVLTYFSKTLAADGWTKIGEDDRGTTPEGIPSKGIAWVKDSLHLSYLVTVWTVGETTQYLTQLSANE*
Ga0167625_1009552	Ga0167625_10095526	F070459	GTPAEPELLSVVQGGIAIIGTQYLAGLREAEARQMLDAAEHEFQSLPPPEAQARQAACQQEGTALYRHASSFERMLITRAAERRIRRLRGG*
Ga0167625_1012220	Ga0167625_10122205	F056237	MSSLGVILKLQATTGLCVRCGIRIPSARNRCLAFDKDKYLEPMFGNAGQARTNAAMLLMLIATTSSHT*
Ga0167625_1016827	Ga0167625_10168273	F074174	MIDLSERTRRISGSRLLDILQQYDAKSVIDPFMGYPTHLNFLKRHGISVHGGDLVDWFVRAGEGLVVNDLTILRDSEVAEIVEMLPGRIYPMDMFKGWDGVFFTEEQCIYLGVWHSNVHNLRSDGQTGLAIAGLWHVLCYWLQKSKYPDDMADIPPSELAWHYIRETEHLVTQNALRNTVRHGSFNTTLAATTADAVFIAPPGRNAHKKADARIWMWEAWWQGDPYLNIERYYRDTIFVQRTNEDSSYDRALGAVFNAAETAPLLILQTTLQNAAHFKTLMHEFRPNVEIVSPHADETYVVGRR*
Ga0167625_1017672	Ga0167625_10176723	F056330	MPTDALLALQASVTKAATFNGAALILATGTPRRGLKARVIYSAATSTTTNACTFSLDVSYDAGSTWNSDFYQPIALALTTTSISGEIFIPFEVSPTSVVNGIQIRLTATVSGGGVATITYQGDITLARP*
Ga0167625_1019978	Ga0167625_10199783	F074174	MIDLSERTRRISGSRLLEILQQYDAKSVIDPFMGYPTHLNFLKRHGISVHGGDLVDWFVRAGEGLVVNDLTILRDSEVAEIVEMLPGRIYPMDMFKGWDGVFFTEEQCIYLGVWHSNVHNLRSDGQTGLAIAGLWHVLCYWLQKSKYPDDMADIPPSELAWHYIRETEHLVTQNALRNTVRRGDFNATLAATTADAVFIAPPGRNAHKKADARIWMWEAWWQGDPYLNIERYYRDTIFVQRTNEDSSYDRALCAVFNAAETAPLLILQTTLQNAAHFKTLMQEFRPNIEIISPHTDETYVVGHR*
Ga0167625_1022742	Ga0167625_10227421	F073235	MCKFKSAIIVQDAKNKGGFRLILSPWTESHSELIIMHKLRDDGALRFARVEYSPPTMETAHVIEVYKLKIDEERTPEWFNEDMKSAVELKLRDYVKSMIVTGDVALLIGGQFIIAPGAKVESAKCMIINAICGGTVSAIYGGTVSAIWGGTVSEIRGGTVSVI
Ga0167625_1024986	Ga0167625_10249863	F083559	IQSWLDAETEQMTYGVTVRLSRLKDPVTRELFSTNLLFYFAEAEMHGIHNVYDMARTLPFTRIRGPRTPVPVCPARVGRLWYDANPEGVIMEDLRLTPTTLPEGGTGFFVTGQGYRGKVMLPDGRFIHDVGVYGGYLDPAERPRQLELQHLFGGIEFGTMTDDRLLTELGEGVWVRGIAESAAGSPHVESYKNSVRLPSADSRRTVIGARSMSETKQIAYFESRSADGLSGFRLGGVIDGLHRALGLQIWDRVHRVGLGSNFVECPELGGYIGLIHVVLEKNNPDFPETLDPAHPGIDEQYEGWVVWLTLDADGVPSIKACVRAITPDDVPTEYQGRGELFDTKRVAFPISLYRTGDALQVGYGWGDRALFQAEFEYGVVIDQLFRRSLK*
Ga0167625_1029689	Ga0167625_10296892	F092148	MSTVKKQEDLSEKIKIALDKAIKKVVEETKAKNSYFVFSDKNGNIKKIPAKDL*
Ga0167625_1030669	Ga0167625_10306691	F081567	VRIAIRATEEAIIRLLKAGHPLPAEVVNAVGPDDTRLPVFQSVEAVPVKDFGMEGTGRIVLARGRKDVWFVDIKRRDSKVTPKESEAFVEMRDKLQKLDKFKSQKVTGWLITTSDMDLKAKSFISEQGCFATAGAAKR*
Ga0167625_1034289	Ga0167625_10342893	F085791	RDARGPRLVPDHPRRARQFPIGFVKTAIGPGAVEDIEVKPQVHFRGERLAVAPSIARFFSVVDIKVGKDSQLAAAGEMPAESFSALAVGVRLELDTAQPGIVIIIKVRNTDAAPHNFEAVLYGTVLE*
Ga0167625_1034651	Ga0167625_10346512	F029384	EGAIDMGSSRLTLGPDASHHVHFGGRKLVIDATVMPETRAVRPGGGRITFDAGGHALYDQTIFALRSKFEGTLWSPDHGTKRIKGFCYADTSYSTVPAYKSASLWYRMEAFDDHAGTTAALAVLFPPEGSQKPPQGWLYTSKGGATEVRSSDVKLSFEQPRHEKGGHFEYDVPQRVVAVAHGASGETVTVDIDARRLLYKEDVLDQMSPLSRFLVSAVAAPMAYTYEDKYKLRIDRPGAASEERGGQALSEFSYANKPSGLPAF*
Ga0167625_1038812	Ga0167625_10388122	F083559	AGQTLYGVTVRLSRLKDPVSRELYSTNLLFYMPEEAMHGMHNVYEMAHRFPFTRIRGPRTPIPLCPARVGRLWYDANPEGVIMEDLRLTPAALPDGRPGFYVTGQGYRGKVMFPDGRFVHDVGVYGGYLDTQERPGQLELQHLFGGIEFGATLTDDDEGRLLAELGEGVWVKGITGNASEDMHVESYKNSVKLPCLDGRKTLIGARSMSDTKQIAYFESLSVDGLSGFRMGGVIDGLNHALGLQIWDRVHRVGLGSNFVPCPELDGYIGLIHVVLEKNNPDFPETLDAVHPGINEQYEGWVVWLMFDADGKPIIKACVRAITPDDVPAGYEGAGELFDTKRVAFPMSLYRIGECLSVGYGWGDRALFQADFDYQTVMALLSSHRRN*
Ga0167625_1040867	Ga0167625_10408672	F068258	MEAREMGLTGMGFNSVAIAAGAIMYWALTFQGHGFRFSTVGVIFMVVGAIGLVISTIVFAMSRRPAGGRQHAYDKQTIDTEGRSTEVHEAVK*
Ga0167625_1046931	Ga0167625_10469311	F005003	MIDATESPFEKTFRLTCRLDDADIDYVRNTAEWIARCVARTLEMNAGANADEVVPLVVDMSTRGRWRLMKPETVGEQLAVPIPRPQG*
Ga0167625_1048896	Ga0167625_10488962	F104247	MTSTPSPLRLYPTEAAAKKAGLALADFRGERISTVLYALLLEGDKEPMYLLSSSSRLTVAERRWVEEHQATVTKLGSFHPGRNFSPLQTNMVRRQKRAEQG*
Ga0167625_1051685	Ga0167625_10516853	F046195	VKFSRRWIEWTHGSGAEDGQPLAISLCDLASAHGAGLIEVADPALIAELVDVAGLYVNPCRGDALHDMGPWWMGQPRRVISEGRAELLRGEPRK*
Ga0167625_1058338	Ga0167625_10583382	F069623	MESSMEIDVNQRVFALQHLDSGEYICLLQEGTDYLACFSDGDSALEFRSSLGLQEHVDLRAMTLDRSPFKHFWLDGENVNIRQE
Ga0167625_1070897	Ga0167625_10708971	F019707	MSGESTKLWRCPGCNRVLIERSVDYVRQRHATLLAQARCGSQEFVREATWPLYLAQLKRCRCGSKRGLKPLPPSAESGQLHLHIEPVVLQ*
Ga0167625_1072654	Ga0167625_10726541	F045483	MAKPRRLVSGLSVLGLSLLVLTGCAVPGGYDVNSLHLQPEAALVYPGSTDVHTNDYGGSPGNYVSKGAVAVTGKSATTTHTQLEVLAYFSRTLASDGWKQTQENVRAATPEGLPAHWVAWDKPKLHLSYFVEVWTVGEATKYYTQFGSNE*
Ga0167625_1072654	Ga0167625_10726542	F045483	MAKQRRLFSGLSVLGLSLLLLTGCVVPGGYDVNSLHLQPESGLVYPGSTGVDPYDYGGSPGNYVSKGAVAVTGKSATTVHTQLEVLAYFSQTLAADGWTKIGENDRGTTAEGIPSKDIAWVKNRLHLS
Ga0167625_1076423	Ga0167625_10764231	F023377	MLAVLAFTGVAAQAMTVSYQCTGRRILAAELSPRQGQLHFEGKDWTVTRVPGGREARYLNKKAGVEVVTQGRTMTFTHDGEALQCYLYSDALPGDAPRKTN*
Ga0167625_1092846	Ga0167625_10928462	F040670	MNPLVNRNNATSDIGRPPPADAPMQVLPWAEDSSRSIGSEDANTRYQGDLFLPGWLKIELQPTAEQGPGA*
Ga0167625_1102922	Ga0167625_11029222	F054765	TARAQTPELVFARALACYRAGRPDLTERVLTEDLPPTEIVDDTALPAFPGPHERWLLLNAPEQATALAALVGGMNGVIAGARPAPFQSEPDTASIEPIEAVTRRLGRGLPGSTVYLAGEFRELDKAKIAAAVEKAGARLVAGPFPGTDYYVHGDVCTVQLIAQLERQGARRLRSGELEGI
Ga0167625_1109240	Ga0167625_11092402	F085356	MAGSRVLHWNGTDIPEELRELPTGTYVVEAVESALELSPEDDLGLSEALASLKAGEGRTLDQVRPTIDSITRR*
Ga0167625_1110205	Ga0167625_11102051	F045483	VTETRRQSTPTAKPRRLFSGLSVLGLSLFVLTGCVVPGGYDVNSLHLLPESALVYPGSTGVDPYDYGGSPGNYVSKGAVAVIGKSATTIHTQLEVLAYFSQTLAADGWTQTRADDTATTPEGFRAKDISWVKN
Ga0167625_1112147	Ga0167625_11121472	F101697	MANKDRADSERACMSRLQEMDEALAKMEPELPDDVRPLGAEARKRVHGWLQRIALGGADLSQLSEAMRDISGMMDALTARLLLVPWDGHPKRGSLKS*
Ga0167625_1114850	Ga0167625_11148501	F034944	DPQAESRFERTERIPVERLMTAGEYVRDTDEWIARCLARVLELDPIIKADEARRSVIELAGLERWRLMKPEAAAEQLYTPIRPGR*
Ga0167625_1116103	Ga0167625_11161031	F016828	MEKTAEQTYTDLLRQLASPSTTLPQVLADTFRDIERMHSMGRITDWQLKNAREAYAATIEREPRQGAPRSPETRADERS*
Ga0167625_1122140	Ga0167625_11221401	F040969	DQHMTREHWLSLGLTEAARPVFEAGTLRTVEAAGTAVVGIPKQGTGHRVLGTASSNEEATVIATILRLFNPN*
Ga0167625_1127775	Ga0167625_11277751	F014178	MKDEIYIGGWTLPRLREKSQTERYEVWRRARALHSAEGNHLARAIERLGLPYAEPEALDGEHPLLDRLSEIVASKEARSAAIEATLDGLPAMAGVDVLLHEKLGEDYRLNPAAVPTAQGLVAELMESLGWERSGKKTLPLRCVAREGVFWKR
Ga0167625_1129023	Ga0167625_11290231	F069623	QRGFALQHLDSGEFICLLQEGTDYLACFSDGDSALEFRALLGLQEHVDLATTTLDRSPFSHFWLDGESVTIAKESEVAN*