3300014961: Wastewater microbial communities from medical facility sewage samples near Freiburg, Germany - C1747

Overview

Basic Information

• IMG/M Taxon OID: 3300014961
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121303 | Gp0151698 | Ga0134526
• Sample Name: Wastewater microbial communities from medical facility sewage samples near Freiburg, Germany - C1747
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Freiburg
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 196301522
• Sequencing Scaffolds: 16
• Novel Protein Genes: 20
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	4
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Microbial Communities From Medical Facility Sewage Samples Near Freiburg, Germany
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Medical Facility Sewage Samples Near Freiburg, Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Germany: Freiburg
• Coordinates
  • Lat. (^o): 48.0
  • Long. (^o): 8.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F050794	Metagenome	145	N
F069722	Metagenome / Metatranscriptome	123	Y
F075481	Metagenome	119	N
F076189	Metagenome	118	N
F076653	Metagenome	118	N
F080163	Metagenome	115	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F087334	Metagenome	110	N
F087336	Metagenome	110	N
F088921	Metagenome	109	N
F089590	Metagenome	109	N
F090513	Metagenome	108	N
F090515	Metagenome	108	N
F093883	Metagenome	106	N
F094005	Metagenome / Metatranscriptome	106	N
F101355	Metagenome	102	N
F102167	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134526_1000104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	53892
Ga0134526_1000475	All Organisms → cellular organisms → Bacteria	24662
Ga0134526_1000999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	15867
Ga0134526_1001046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	15502
Ga0134526_1001357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	12789
Ga0134526_1003177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	6726
Ga0134526_1005760	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	4216
Ga0134526_1009473	All Organisms → cellular organisms → Bacteria	2776
Ga0134526_1010759	Not Available	2502
Ga0134526_1010894	Not Available	2478
Ga0134526_1011466	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2379
Ga0134526_1011552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2368
Ga0134526_1014823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1947
Ga0134526_1026336	Not Available	1227
Ga0134526_1035431	All Organisms → cellular organisms → Bacteria	959
Ga0134526_1066853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	586

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134526_1000104	Ga0134526_100010438	F087336	MVAELEQVPKAFKAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP*
Ga0134526_1000475	Ga0134526_100047521	F094005	MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDDKTLEKVITLDKKLKKLIEKLNE*
Ga0134526_1000475	Ga0134526_100047522	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHSNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIERYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0134526_1000475	Ga0134526_100047524	F080163	MKTIKFLQESFETKERFQQEINIKYSYNLDIVESIDFRINQRNIRYFYEAMQNFENSLVDEFKEKKNNFCSANQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESKVLDSEIELLQEKLDLIREEICELIGVDPNLEKQGHEDNYIFNLNIDSDNQIGFLLQATEL*
Ga0134526_1000999	Ga0134526_10009994	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA*
Ga0134526_1001046	Ga0134526_10010467	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLCRAAALFEYWEKHP*
Ga0134526_1001357	Ga0134526_10013574	F090513	MLKIFAMAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFT*
Ga0134526_1003177	Ga0134526_10031772	F088921	MHKAARYFLWRLKKIAVKTSALGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMRSKS*
Ga0134526_1005760	Ga0134526_10057603	F076653	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYRCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFSSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKEYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYDKGFKERLAKRFNKSLGGDGELFGANLACMVCDRKDIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYLYYTFNK*
Ga0134526_1009473	Ga0134526_10094731	F102167	MDINQIKTYLPSGWDVVDLIDHGIIDLDIMNGKMMGEYMAVLMIKSYDKITESHNLTTFSFHDKDMGGLRRLVSNAIMAVGLRNNPLTGDGNTAIK*
Ga0134526_1009473	Ga0134526_10094734	F083452	MSGRVKIKSKDKNKKPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIERYIKR*
Ga0134526_1010759	Ga0134526_10107593	F075481	MIRLRISLKAVFCLGLSLSLSSCGSRRQVSETSIDSRLISRIETMIDEVMDRKIVEIKTSDLNADIVITERKFDTDKDVDPATGERPVSSQTDTHIVIGRRDSTVTADSVGIDKTITGIEDIDKKTDIEHKDVDDKKESRWPIAVTSISVLLILLGLIYLLKKMKVL*
Ga0134526_1010759	Ga0134526_10107594	F089590	NIAIAYGTSCWAYFQPVHHLLIVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKAFKAVFNRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS*
Ga0134526_1010894	Ga0134526_10108943	F093883	LKEEADTHIRHWLAIKRESKRLYSEIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKADE*
Ga0134526_1011466	Ga0134526_10114662	F083451	MIMDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMAECKKEIDYLMKGTSKSFQISFAVRSDEMREMIENMVGDNIREGYDVFSKEAEMVNETDRDKIEEFNKSLAHE*
Ga0134526_1011552	Ga0134526_10115526	F076189	VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLHAIQSAQKQLRMLCNFHENTFGLLIFYANYAIL*
Ga0134526_1014823	Ga0134526_10148235	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLEKPIGIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR*
Ga0134526_1026336	Ga0134526_10263361	F050794	MLYTSNYFVKVRQKQLLDHTYSLSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEYNGIIKKLMREAEKLELDTDAIEAMMRDLLDELKDDIDLNILIFDVSQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG*
Ga0134526_1035431	Ga0134526_10354311	F069722	PVRLTAELDPKAKRERLDLKTHATHENALRHGSGEALQE*
Ga0134526_1066853	Ga0134526_10668532	F090515	PGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS*