3300014954: Human fecal microbial communities from infant at 12 months in Denmark - 615_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300014954
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193824 | Ga0169837
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 615_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 130495543
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055715	Metagenome	138	N
F062845	Metagenome	130	N
F067845	Metagenome	125	N
F068811	Metagenome	124	N
F076190	Metagenome	118	Y
F087335	Metagenome	110	N
F089054	Metagenome	109	N
F099269	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169837_100123	Not Available	85964
Ga0169837_100583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	24736
Ga0169837_100826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	18079
Ga0169837_101522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	10813
Ga0169837_101706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	9801
Ga0169837_104158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	4377
Ga0169837_104252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	4283
Ga0169837_106771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2701
Ga0169837_106796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2694
Ga0169837_108825	Not Available	2105
Ga0169837_117357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1118

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169837_100123	Ga0169837_10012341	F089054	MLTKGKFLVSFEVPGHTKEYTEGFTEEMIIPYRTEELNQYLRYPNQEINNNHLHSEHIRLQIREILQIPLRDITIIDIISLP*
Ga0169837_100583	Ga0169837_10058320	F055715	LTKANEFDKMNELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAEILDN*
Ga0169837_100826	Ga0169837_10082613	F068811	MDQDGSEHNICSNREGLCPGKEPHGASGWKKIFQHGKEPLRNKDSVSQYCNKKASVLLILNENVSETLCIFSIDKTNCCRI*
Ga0169837_101522	Ga0169837_1015227	F062845	MKKTPFILHEKFRSDNNEQRKEDFQKKFERYIIDGLLNAVPPRSCA*
Ga0169837_101706	Ga0169837_1017061	F055715	LTKANEFDKINELLIERTAKKFERASENKLKKFLTNEKLCDKINELIRVRTAKILDN*
Ga0169837_104158	Ga0169837_1041585	F062845	EKGDSMKKTPFILHEKFRSDNNEQRKEQFQKRFEQYIVDELSNTVPSKSCA*
Ga0169837_104252	Ga0169837_1042525	F087335	MPELYFNDANLLPESCEAEQYAEAVLNDILAGKTANKEMCILPCFYHAPMCKGVLIYLDDGTTLRIKPTLNEVGEPELLIRCVTEETVEEVYQWVSNYD*
Ga0169837_106771	Ga0169837_1067712	F067845	MKHWKNLLVCLLAGVLVLGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNHFLYWSGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAAELLDDAADHSELGAAFIDYNGTAYVVAVFR*
Ga0169837_106796	Ga0169837_1067965	F076190	SCWARTAGGSRTISAKNVFTVASRVSGYVWSLVRITVPNGLKSVKIGVEKPQNNFLYPYFQREPL*
Ga0169837_108825	Ga0169837_1088252	F062845	MEKTPFILHEKFRSDNNEQRKEHFQKKFERYIVDELSNT
Ga0169837_117357	Ga0169837_1173571	F099269	VRELLLLDDLGDRSSGASVLASATGDAGVLVSDGGDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV*