3300014947: Human fecal microbial communities from infant at 12 months in Denmark - 589_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300014947
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193800 | Ga0169813
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 589_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 131465733
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → [Eubacterium] rectale	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F054110	Metagenome	140	N
F067844	Metagenome	125	N
F077405	Metagenome	117	N
F078004	Metagenome	117	N
F090514	Metagenome	108	N
F099269	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169813_100555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → [Eubacterium] rectale	45166
Ga0169813_100813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	32337
Ga0169813_102692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens	6789
Ga0169813_104260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	3957
Ga0169813_115968	Not Available	915
Ga0169813_118040	Not Available	793
Ga0169813_126067	Not Available	535

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169813_100150	Ga0169813_10015048	F078004	LSSRNTDLLFRKSSAGGLSAVAGSAALDIYMIRHTLIITVIDALYRLTVDADGMAWMRQGITERFSSLSLLCKAFTAGSVTVAGMLASHHDITLAAQTILIIGTIFHNTF*
Ga0169813_100555	Ga0169813_1005552	F067844	MNTLAAETASAWYLILNRKRPPKRAVASYFNMTQFSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP*
Ga0169813_100813	Ga0169813_10081331	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRTRAGSSLPLSPASIFF*
Ga0169813_102692	Ga0169813_1026922	F099269	VQVGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASRAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*
Ga0169813_104260	Ga0169813_1042601	F077405	GRALPTELFPRLLVAKQRGVFYGFISLCQIKFVKKVFDWLKIVQK*
Ga0169813_115968	Ga0169813_1159681	F026592	LCCLRTASPQGIAALAAQGGVATLTERSDATFSVGQFSSADRE*
Ga0169813_118040	Ga0169813_1180401	F077405	GRALPTELFPRLLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQKQKVRLK*
Ga0169813_126067	Ga0169813_1260671	F054110	VDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGE*