3300014946: Human fecal microbial communities from infant at 12 months in Denmark - 635_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300014946
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193844 | Ga0169857
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 635_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 118964674
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F039198	Metagenome	164	Y
F047126	Metagenome	150	N
F067720	Metagenome	125	Y
F068811	Metagenome	124	N
F076189	Metagenome	118	N
F089053	Metagenome	109	Y
F092228	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169857_100598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	34356
Ga0169857_101210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	13461
Ga0169857_104039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	2975
Ga0169857_105327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2242
Ga0169857_108147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1498
Ga0169857_108513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1441
Ga0169857_111920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1075
Ga0169857_121838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	651

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169857_100598	Ga0169857_1005983	F076189	MRINHFKIMQCPAGCVICRALFFYFLSPFIKPPLYVEKLQIGTVLPVVPDLYREFSEISACFDLCAIQSAQKQLNMLCNFHENTLGLLIFYTNYAII*
Ga0169857_101210	Ga0169857_10121016	F029444	MEASGQLTGFEREDLMSWTASNLQRPLREDVSLEISGIIAEKESQIFGRRFVGFDGPKKAAPFFNF*
Ga0169857_104039	Ga0169857_1040392	F089053	MEGPRPDKFAFSVKLERVVDECRPIKGCIRKWLYIFANGQPELSTAEEVNVKNMEASL*
Ga0169857_105327	Ga0169857_1053275	F067720	MSSTTYGHIGDLTDMFAVQEQFRHATKMVCDFVDLNKIDHFAVIGNMVRNAGQLPQPFWLGAACGGGSCSA
Ga0169857_108147	Ga0169857_1081472	F068811	MDKMDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSISQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI*
Ga0169857_108513	Ga0169857_1085132	F039198	MQITSYEVTNTKYIQIYLTKEELEKQETKELINKYKQEKYSVAIFVTGKENYPEILKKIVTKQVELNKNVC*
Ga0169857_111920	Ga0169857_1119201	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGSLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIVERIFEDKTDEYGYSFKVGKQYIFKRYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNSDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGMANSWVKGYLIDQLAIS*
Ga0169857_121838	Ga0169857_1218383	F047126	GILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC*