3300014940: Human fecal microbial communities from infant at 12 months in Denmark - 626_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300014940
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193836 | Ga0169849
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 626_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 100003510
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F032286	Metagenome / Metatranscriptome	180	Y
F068811	Metagenome	124	N
F076190	Metagenome	118	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169849_100117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	79527
Ga0169849_100243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	49466
Ga0169849_116593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	810
Ga0169849_124631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	590

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169849_100117	Ga0169849_10011714	F076190	VTTAGGSITISAKNVFTAASRVSGYVWSLVRITVPNGLKSVRIRGRKTQNNFLYPYFQREPL*
Ga0169849_100243	Ga0169849_10024343	F032286	MRSMVKWVCQTVTSVRHRALVFNTWLFAGNAADDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISLFSLALIFIFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRVLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKRAEI*
Ga0169849_116593	Ga0169849_1165932	F068811	MDQDGSEHNICSNREGLCPGKEQHGASGRKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRIK*
Ga0169849_124631	Ga0169849_1246312	F026489	METAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKGWATPEKTEDLRLFGV