3300014831: Raw sludge microbial communities from sewage treatment plant in Sweden - SWESTP63 - Kappala-primary 226

Overview

Basic Information

• IMG/M Taxon OID: 3300014831
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127417 | Gp0192501 | Ga0167340
• Sample Name: Raw sludge microbial communities from sewage treatment plant in Sweden - SWESTP63 - Kappala-primary 226
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Gothenburg
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 467169048
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Lillamyvirus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Lactococcus → Lactococcus raffinolactis	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sewage Microbial Communities From Wastewater Treatment Plant In Sweden
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Raw Primary Sludge → Sewage Microbial Communities From Wastewater Treatment Plant In Sweden

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Sweden
• Coordinates
  • Lat. (^o): 59.355554
  • Long. (^o): 18.227079
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003622	Metagenome / Metatranscriptome	476	Y
F010914	Metagenome / Metatranscriptome	297	Y
F030759	Metagenome / Metatranscriptome	184	Y
F060985	Metagenome / Metatranscriptome	132	N
F062845	Metagenome	130	N
F067844	Metagenome	125	N
F067845	Metagenome	125	N
F074867	Metagenome / Metatranscriptome	119	N
F076005	Metagenome / Metatranscriptome	118	N
F089054	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0167340_1020009	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes	2543
Ga0167340_1040118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1569
Ga0167340_1053372	All Organisms → cellular organisms → Bacteria → Proteobacteria	1284
Ga0167340_1111174	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Lillamyvirus	784
Ga0167340_1115969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Lactococcus → Lactococcus raffinolactis	762
Ga0167340_1145027	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216	661
Ga0167340_1147012	Not Available	655
Ga0167340_1149171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	649
Ga0167340_1158293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	625
Ga0167340_1168181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	602

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0167340_1020009	Ga0167340_10200091	F096161	SWRKKLSCLSDKGASLDGFSQLSASFSSEAGAVLTFLFTFCVKTKSKSGLGAEAPVK*
Ga0167340_1040118	Ga0167340_10401181	F067844	MNTLAAETTSAWYLILNRKRQTLPIYISQLSSHLPRPLTMGTQQVSAGADV
Ga0167340_1053372	Ga0167340_10533722	F010914	MIYKILVEQNGKFVATGETIECEFEETQAVIDELQLEHGCCCALEAVNE*
Ga0167340_1111174	Ga0167340_11111743	F003622	MRSYKNELEAIANDLLTQNAEAKGNENKPNYSNRDFMNAVIIFQTALMDKMYDNQNGMSLDERMEMAERCGLDLRKLIHTYTGLDIHKFEEFL*
Ga0167340_1115969	Ga0167340_11159691	F089054	MLTKGEFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNPYLRYPNQEINNNHLHSEHIRLQIREILQIPLRDITIIDIISLP*
Ga0167340_1145027	Ga0167340_11450272	F030759	VKFLSWFGTFASIIGSFVVASQIFLLGYCFFIAGSVSWLLVGWLRRDASLMVLNGTFMLANFWGLYVAI*
Ga0167340_1147012	Ga0167340_11470121	F095356	VSVGDDAMITAPVAKALLEHDPKLIPVILGCLNHFEIAIDDKQIAPQRMTTPPQARQFKTLGAAYSYLRNFLDYRGDVSIRLSDPTTGTGDIL*
Ga0167340_1149171	Ga0167340_11491711	F074867	GITDIILNGEAFELHPTFSNLDKLETVLNKGAIGFLRQDLSSGAFKAGDVVSIIQVCAVPANGRKFPSWWTRDGVGEAVIGAGLVNVTTSVTHFLAKALTAGTETDIKTVGSESDEKK*
Ga0167340_1158293	Ga0167340_11582931	F060985	LVYNILIWISIMSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCRIFDNQNHELWHSVIKPWFQPERFGITHLWFPSGFSHIGYGEYHIIRGNRWMKTPIDKIDRENRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD*
Ga0167340_1168181	Ga0167340_11681811	F067845	LLAGVLALGVLTACSGLGGVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMGYTGDLNKFLYWSGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAVELLDDAADHSELGAAFIDYNGTAYVVAVFR*
Ga0167340_1193101	Ga0167340_11931012	F062845	MKKTPFILHEKFRSDNNEQRKEHFQNEFERYIVDELSNTALSKSCA*
Ga0167340_1196334	Ga0167340_11963343	F076005	IMKHFKVRVQYTNGIDFLFECDAVTGWQAGALARVAGRLAGFGGSMDVKETIVVEV*