3300014824: Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P279T2

Overview

Basic Information

• IMG/M Taxon OID: 3300014824
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121299 | Gp0151664 | Ga0134492
• Sample Name: Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P279T2
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Washington
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 407332508
• Sequencing Scaffolds: 18
• Novel Protein Genes: 19
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: University of Washington
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F032286	Metagenome / Metatranscriptome	180	Y
F042936	Metagenome	157	N
F051936	Metagenome	143	N
F052660	Metagenome	142	N
F056682	Metagenome	137	Y
F067845	Metagenome	125	N
F068811	Metagenome	124	N
F068855	Metagenome	124	N
F071325	Metagenome	122	N
F074899	Metagenome / Metatranscriptome	119	N
F076189	Metagenome	118	N
F078693	Metagenome	116	N
F088920	Metagenome	109	Y
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134492_1000110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	130818
Ga0134492_1000171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	103906
Ga0134492_1000381	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	68078
Ga0134492_1000487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	58387
Ga0134492_1001258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	30440
Ga0134492_1001466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	27315
Ga0134492_1001607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	25605
Ga0134492_1002130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	20803
Ga0134492_1002261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	19722
Ga0134492_1002741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	16941
Ga0134492_1006398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	8111
Ga0134492_1008451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales	6323
Ga0134492_1010613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	5114
Ga0134492_1011237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	4848
Ga0134492_1013204	All Organisms → Viruses → Predicted Viral	4185
Ga0134492_1036965	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1590
Ga0134492_1040037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1482
Ga0134492_1068197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	951

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134492_1000110	Ga0134492_10001102	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDNLNHFLFWSGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAAELLKDAVGHSKMGAAFIDYNGTAYVVAVFR*
Ga0134492_1000171	Ga0134492_100017150	F026489	LTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF*
Ga0134492_1000381	Ga0134492_100038157	F032286	MRSMVKWVCQTVTSVRHRALVFNTWLFAGNAADDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISLFSLALIFIFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQNRKRAEI*
Ga0134492_1000487	Ga0134492_100048736	F026489	LVAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF*
Ga0134492_1001258	Ga0134492_100125812	F068811	MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSLILNKNVSETLCIFSIDKTNCCRI*
Ga0134492_1001466	Ga0134492_100146624	F071325	DFPSRLRFHKFQYCSIFKVLLALLLDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL*
Ga0134492_1001607	Ga0134492_10016076	F078693	MNGFSRWWRGAERFCSKANVLFCVPKENQKSTSDFDALDPRERGCSPLSDPKGEVETEKS
Ga0134492_1002128	Ga0134492_100212821	F078693	LRAKREPEKHQRRAPVRGAERFFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVETEKS*
Ga0134492_1002130	Ga0134492_100213022	F068855	VPTVEAQGPQARKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW*
Ga0134492_1002261	Ga0134492_10022614	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNVEKVEQKRALTPPYLGKVYFRLRLRGKG*
Ga0134492_1002741	Ga0134492_100274123	F074899	QAATSSFLDKKPPQSLVQQGLEGSTAVGKDEVGSSNLPSSSK*
Ga0134492_1006398	Ga0134492_10063981	F074899	MSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTAVGKDEVGSSNLPSSS
Ga0134492_1008451	Ga0134492_10084513	F052660	MCILRILPENTPEKIGQERAGTEWTVVKSKIRLRIRNRSCGRFLHGGILMGIALPIPSHRAKSHDFAYWWPAAAGHSRSADALPGKSNS*
Ga0134492_1010613	Ga0134492_10106133	F088920	VSARPHYYLAFGAGLILHLILHFSQKAAIFAPKRAILLIFVPTLFFACLAVFSLHTSPKISGQTSLYQPWLSSYCLFKD*
Ga0134492_1011237	Ga0134492_10112373	F076189	MPGRLCYLPGIAFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLYNFHENTFGLLIFYANYAIL*
Ga0134492_1013204	Ga0134492_10132042	F097493	MYKFYVKNGTAYFYERGVEIDGTVYGIRTDRDILRIKRNVVNNKFAETDDNFDMDTEIAKIQHTDVTFEQPTAEQLEQIQAKTYNSMTELKQHVQSVMNGDETMSQDEINAMLMLQIAELKAGVDGE*
Ga0134492_1036965	Ga0134492_10369653	F051936	EQEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVISIFFLMLIIRYLSIHISIKK*
Ga0134492_1040037	Ga0134492_10400371	F076189	VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELLACFDLHAIQSAQKQLHMLCNFHENTLGLLIFYTDYAII*
Ga0134492_1068197	Ga0134492_10681973	F056682	QNTMKMQSRAGKVANQSIRQGEIYSASFGTFPSKNRSTFPIQKLGKIHENQEVL*