3300014802: Human fecal microbial communities from obese patients in Germany - AS66_24

Overview

Basic Information

• IMG/M Taxon OID: 3300014802
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151546 | Ga0134374
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS66_24
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 144168138
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-Q4896	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → Parabacteroides distasonis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F044554	Metagenome	154	N
F051936	Metagenome	143	N
F062845	Metagenome	130	N
F076189	Metagenome	118	N
F078004	Metagenome	117	N
F088914	Metagenome	109	N
F090514	Metagenome	108	N
F101355	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134374_1000215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	61079
Ga0134374_1003090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5905
Ga0134374_1003418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	5388
Ga0134374_1013023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1469
Ga0134374_1017800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-Q4896	1068
Ga0134374_1019118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	999
Ga0134374_1019974	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → Parabacteroides distasonis	957
Ga0134374_1023368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	826

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134374_1000215	Ga0134374_100021557	F062845	MKKTPFILHEKFRSDNNEQRKEQFQKRFEQYIVDELSNTVPSKSCA*
Ga0134374_1003090	Ga0134374_10030901	F026489	GCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF*
Ga0134374_1003418	Ga0134374_10034183	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLYFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHSQGQYRFNSHRYCFSAFLVL*
Ga0134374_1009532	Ga0134374_10095321	F078004	GSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF*
Ga0134374_1013023	Ga0134374_10130233	F090514	MNLRFHALKKDYRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGANWFVILLTIVPAGSRTRAGSSLPYSPASNIFLKQTPRRGLPLA*
Ga0134374_1017800	Ga0134374_10178002	F076189	MPGRLCYLPGIVFYFLFPFIKPLLYVEKLQIGTVLPVVPDLYREFAEISACFDLYAIQSAQKPLHMLCNFHENTLGLLIFYTDYAIM*
Ga0134374_1019118	Ga0134374_10191182	F101355	MIEPPFQHGIADLAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA*
Ga0134374_1019974	Ga0134374_10199743	F051936	MKQEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVISISKKMLIVRHLSIHIYIKK*
Ga0134374_1023368	Ga0134374_10233682	F088914	LTAAVGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGKFIVFSAWYAAKALETDVK*