3300014799: Human fecal microbial communities from obese patients in Germany - AS45_0

Overview

Basic Information

• IMG/M Taxon OID: 3300014799
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151549 | Ga0134377
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS45_0
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 148126176
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F029444	Metagenome	188	Y
F067844	Metagenome	125	N
F076190	Metagenome	118	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134377_1000068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	112173
Ga0134377_1012095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1768
Ga0134377_1012322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1739
Ga0134377_1013368	All Organisms → cellular organisms → Bacteria	1614

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134377_1000068	Ga0134377_1000068109	F026489	LTPKENQKSASDFDALEPRKRXXXXAAPEKTEDSRLFGVKIF*
Ga0134377_1012095	Ga0134377_10120953	F029444	MEVSERLTGFELEDLMSWTVSNLQCPFREDFSLKKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF*
Ga0134377_1012322	Ga0134377_10123221	F067844	MNTLAAETTSAWYLILNRKRQTLPIYISQLSSHLPRPLTMGTQQVSAGAAVITPQHRS
Ga0134377_1013368	Ga0134377_10133681	F076190	SITMSAKNVFTAASRVSGRVWSLVRITVPNDLKFVRIRVEKPQNNSLYPYFQREPL*