3300014776: Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10002

Overview

Basic Information

• IMG/M Taxon OID: 3300014776
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121306 | Gp0151727 | Ga0134555
• Sample Name: Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10002
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Bologna
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 97164100
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Community Of Hadza Hunter-Gatherer And Regular Subjects From Tanzania And Italy
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Community Of Hadza Hunter-Gatherer And Regular Subjects From Tanzania And Italy

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Tanzania
• Coordinates
  • Lat. (^o): -3.6347588
  • Long. (^o): 35.0828588
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052660	Metagenome	142	N
F056682	Metagenome	137	Y
F081354	Metagenome	114	Y
F088920	Metagenome	109	Y
F089053	Metagenome	109	Y
F090514	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134555_1001431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6637
Ga0134555_1006761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2278
Ga0134555_1012908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1389
Ga0134555_1014041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1296
Ga0134555_1023756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	837
Ga0134555_1036529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	586

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134555_1001431	Ga0134555_10014312	F090514	MNLRIHALKKASRQRPGVKTAAARFFSILYYPFYAKRSSFFQQNVQPRGNFFANRPIFVYFADIPPRLTGAKWFVILLTIVPAGSRARAGSSLPLSPASNIFLKQTPRRGLPLAWNAGAGPFLFCG*
Ga0134555_1006761	Ga0134555_10067613	F052660	LRILSENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIVLPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNS*
Ga0134555_1012908	Ga0134555_10129082	F056682	MKMQSRAGKVANQSIRQGKIYSASFGAFPSKNRSTFPIQKLGKIYKNQEVL*
Ga0134555_1014041	Ga0134555_10140411	F088920	VSANLHHYPAFWAGLILHLILHLILHFSQKVAIFALKRVILLLFVPTLFFAGLSVLFPQTSPKISGQTSLYQPWLSPYCLFKD*
Ga0134555_1023756	Ga0134555_10237562	F089053	MEGPRPDKFAFSAKLERVVDECRPVKGCIRKWLYVFANEQQELSTAEEVNVKNMEAFL*
Ga0134555_1036529	Ga0134555_10365292	F081354	FLKSSRRSALKKGAVATIPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNTLRRLAFLPFHL*