3300014757: Human fecal microbial communities from obese patients in Germany - AS53_3

Overview

Basic Information

• IMG/M Taxon OID: 3300014757
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151547 | Ga0134375
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS53_3
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 80804170
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → Viruses → Predicted Viral	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057001	Metagenome	137	Y
F064725	Metagenome	128	N
F075481	Metagenome	119	N
F083452	Metagenome	113	N
F089053	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134375_100039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	99096
Ga0134375_103341	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2388
Ga0134375_103852	All Organisms → Viruses → Predicted Viral	2121
Ga0134375_111402	Not Available	929
Ga0134375_114408	Not Available	787

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134375_100039	Ga0134375_1000394	F089053	MEGPRPDKFAFGVKLERVVDECRPVKGCIRKWLYIFANGQPELSTAEEVNVKNMEVSL*
Ga0134375_103341	Ga0134375_1033411	F083452	MSGRIKIKPKNKDKKPKIDVFKVIEDRFKNMNELRDLIDMDPKKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIELIERY
Ga0134375_103852	Ga0134375_1038521	F057001	VPRARANLMRSKDLNKVQSEVKKASEKTLTGAVKAWCNLFKSGKEINEILKDNDIKVDKAIVPALVSLAKDKEIVIQLCKEILPRVNTTFCAYKEVERVYFDKLDQDKNIKTAIDKIESVAILGTNHKRFGYNEPVEYDGGVYYDVFNGSDKRIVKCAIPIKRYTYNLIAKCITYYLTHPKNDR*
Ga0134375_111402	Ga0134375_1114022	F075481	MRLRISLRAVFCLGLSLSLSSCGSRRQVSEASIDSGLISRIETMIDEVVDRKVVEIKTSDLNADIVITERKFDTDKDVDPATGERPVSSQTDTHIVIGRRDSTVTADXXXXXXXTVGVNKTRNDIKDLDNKIDIKSKDVDDKKGSRWPIAWIVAGISMILLVLVYILNRIKIL*
Ga0134375_114408	Ga0134375_1144081	F064725	MGLQSVEVFVIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAIMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIVYRATPKDEDGLPYIPETALGYLEDYVETYIKMKIFEN