3300014744: Human fecal microbial communities from obese patients in Germany - AS50_12

Overview

Basic Information

• IMG/M Taxon OID: 3300014744
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151565 | Ga0134393
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS50_12
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 71901059
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F076190	Metagenome	118	Y
F087334	Metagenome	110	N
F087335	Metagenome	110	N
F090513	Metagenome	108	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134393_100232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	21558
Ga0134393_100595	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	9709
Ga0134393_101223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	5349
Ga0134393_102396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	3043
Ga0134393_111216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	906
Ga0134393_119491	Not Available	603

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134393_100232	Ga0134393_10023228	F076190	VRTAGGSITISAKNVFTAASRVSGRVWSLVRITVPNDLKSVRIRVEKPQNNSLYPYFQREPL*
Ga0134393_100595	Ga0134393_1005954	F099451	MEIKNVGQLRKIIENLPDDFEIEMRVRRKLTDEELKNCRYPYPYDTEYLILEFDDVGVSSKVLCLGVTSNE*
Ga0134393_101223	Ga0134393_1012232	F087334	MASRYPFVGAAAYLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLTITFLYHPKDFFLYRAAALFEYREKHQ*
Ga0134393_102396	Ga0134393_1023963	F090513	MEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTY*
Ga0134393_111216	Ga0134393_1112162	F087335	MIELYFNDANLLPENREEEQYAEAALNSILAGKTADVEMCIQPCFYNAPLHKGLLYNLDDGTTLRIRPILNEAGEPELLIRCVTEE
Ga0134393_119491	Ga0134393_1194912	F042936	MGRRGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKAYFRSRLRGKG*