3300014651: Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P271T3

Overview

Basic Information

• IMG/M Taxon OID: 3300014651
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121299 | Gp0151660 | Ga0134488
• Sample Name: Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P271T3
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Washington
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21911769
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: University of Washington
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F080163	Metagenome	115	N
F089053	Metagenome	109	Y
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134488_100220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6057
Ga0134488_101324	All Organisms → cellular organisms → Bacteria	1864
Ga0134488_105546	Not Available	704
Ga0134488_109460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	509
Ga0134488_109579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134488_100220	Ga0134488_1002203	F089053	MEGARPDKFAFSVKLERVVDGCRPIKGCIRKWIYGSANGQPELSTAKEANVKNVEVSL*
Ga0134488_101324	Ga0134488_1013241	F032312	DLSAPKLLRERARERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSYGNYKGSSMNFDAMVCLCFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0134488_101324	Ga0134488_1013242	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENFLVNEFKEKKNNFCDAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESKILKSEIELLQEKLDLIREEICKLIGVDPNLEKQGHEDNYVFNLNINSDNQIGFLLQATEL*
Ga0134488_105546	Ga0134488_1055461	F044555	IMKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPDLEKPIEIQVLTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHKR*
Ga0134488_109460	Ga0134488_1094601	F105375	MKNNETFQTTQHLDKLVTNLDLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV*
Ga0134488_109579	Ga0134488_1095792	F101357	IYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNTSNIHYEGGKCPSMLTIQLFNLEF*