3300014565: Human fecal microbial communities from infant at 12 months in Denmark - 82_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300014565
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193868 | Ga0169881
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 82_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 145894151
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F047125	Metagenome / Metatranscriptome	150	N
F067844	Metagenome	125	N
F076190	Metagenome	118	Y
F078693	Metagenome	116	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169881_100086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	140879
Ga0169881_100956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	24666
Ga0169881_101072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	21963
Ga0169881_104639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4351
Ga0169881_133596	Not Available	532

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169881_100086	Ga0169881_1000861	F067844	MNTLAAETASAWYLILNRKLQTLPIYKTQLSSHLPRPLTMGTQQVSAGAAVITPQHRSY
Ga0169881_100956	Ga0169881_10095627	F029444	MEVSGQLTGFEREALMSWTVSNLQRPLREDVSLEISGIIAEKESQIFGRRFVGFDGPKKAAPFFNF*
Ga0169881_101072	Ga0169881_10107223	F047125	MDVVLLLMVLGVMLSGFWAADALDHMRKEIIRQEGKRRGWGS*
Ga0169881_104639	Ga0169881_1046393	F078693	MVLAPVRGAERFFIKANYSLLMSKENQKTTSDFDALDPRERGCSPLSDPEG
Ga0169881_133596	Ga0169881_1335962	F076190	VTTAGGSITISVKNVFTAASRVSGRVWSLVRITVPNGLKFVKIRVEKPQNNSLYPYFQREPL*