3300014290: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_080

Overview

Basic Information

• IMG/M Taxon OID: 3300014290
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121296 | Gp0151535 | Ga0134363
• Sample Name: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_080
• Sequencing Status: Permanent Draft
• Sequencing Center: The George Washington University (GWU)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 48879776
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Maryland
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054110	Metagenome	140	N
F077405	Metagenome	117	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134363_100030	Not Available	55682
Ga0134363_100292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	13334
Ga0134363_104414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1679

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134363_100030	Ga0134363_1000304	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIITDSTHQFVTDEEKNKWNNKLNAPVPMQDHLANNQIGYDSVNSKFYIGLNNQNVLFGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCIEYTAGDLGEVSVSYTTDAISIYNTGSFTGSFQCLIVYPLGSVNE*
Ga0134363_100292	Ga0134363_10029211	F054110	VNYQPTIKKLLKALQINGRRYVVDVRQSWSKYDKPCKVYIVNRMYTKEEYKLTFPHKYKKGKTFKPKQLYKKESEYSSTKQHEVLLFLVKTYKGGE*
Ga0134363_104414	Ga0134363_1044144	F077405	GRALPTELFPHLLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQKQKVRLK*