3300014108: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_024

Overview

Basic Information

• IMG/M Taxon OID: 3300014108
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121296 | Gp0151531 | Ga0134359
• Sample Name: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_024
• Sequencing Status: Permanent Draft
• Sequencing Center: The George Washington University (GWU)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 67257514
• Sequencing Scaffolds: 9
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-78	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Maryland
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F035626	Metagenome / Metatranscriptome	171	Y
F036281	Metagenome	170	N
F051214	Metagenome	144	N
F067846	Metagenome	125	Y
F073671	Metagenome	120	N
F081456	Metagenome	114	N
F094706	Metagenome	105	Y
F101360	Metagenome	102	N
F103434	Metagenome	101	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134359_1000059	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	19093
Ga0134359_1000157	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	12873
Ga0134359_1002176	All Organisms → Viruses → Predicted Viral	3263
Ga0134359_1004441	All Organisms → Viruses → Predicted Viral	2011
Ga0134359_1007085	All Organisms → Viruses → Predicted Viral	1448
Ga0134359_1007993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	1327
Ga0134359_1011261	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-78	1056
Ga0134359_1023761	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae	642
Ga0134359_1026569	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	597

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134359_1000059	Ga0134359_10000596	F103434	MVGYRPRRGRFLENGPHAVEVTLAVVKEGRTGRRYERGETVYIDRVLVQPSAGNALKATENRDIRGDLTDETTLKVMGTGRKWPGGPHSWVKVIKGPASLEGKTFQQAGEPLTYDASPMTRHWAVRCDTLGTGAK*
Ga0134359_1000157	Ga0134359_100015716	F018385	MAEYVNQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTIYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEAK*
Ga0134359_1000157	Ga0134359_100015718	F051214	VPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPVYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0134359_1000157	Ga0134359_10001575	F081456	MFEEPPIYYILISLIFLIVFGAISFATWLVWLTSIAFFAKLVVTAIGFLLCAFTVILYTISAD*
Ga0134359_1002176	Ga0134359_10021768	F101360	MNKEDALRRAVIAAHIARVASQQKKKALKELEEVMAPGDSSKPAIDGRQIGTVSVSAPQPRYQVVDEKALVAWLEWNKPEAVHKVPAPWFTAAAALDGFIKQTGEIPDGVEVIQGDPHISARISAAQEETIRDLISTGDISLLTIEGPDA*
Ga0134359_1004441	Ga0134359_10044415	F067846	MSIIADWERQEFNKWDKQCSKQDDYNRAIEMEIEAIKEDIANGDDDAICAFSEKMFDDDEFLKADALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND*
Ga0134359_1007085	Ga0134359_10070852	F036281	MITLIKVDEGPVDIHELRSRYLGKLKTEEGVMLPTFLFRNREYFITNFTPAPNDSWLLTLSNAEGAITRLTVKNGELMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTITNVKGHQSYDWVLKNVEWAADTIRYF*
Ga0134359_1007993	Ga0134359_10079934	F073671	MNNKQAEQELAELHEKERSLEKALEIVREKIRELINYTDKNKEQK*
Ga0134359_1011261	Ga0134359_10112611	F035626	MAPTIINSDAVQGETFLPGQIFVFGGFALRANSLGHLEQIESYAPGHQVRFGSLNYTADIHGDLIFDGFEPQPSAPHCLDGHDLALPPDSAQSAAQMSAP
Ga0134359_1023761	Ga0134359_10237611	F094706	VGPAHGGFEFLKGSFEGLKGYAVGRMTKSRRGKLYIDDANWGPDAGSIEYGYRVPFGGIHVFIRKIGELGPEPDICTDLVETAQRARPARVQPAIKRAFVGVIHGVESKDRSESGGETVVYSGDESSTGETESLYQLQDGRIGGCSDGDSIPDPPGQINRVGIFMAGTQA
Ga0134359_1026569	Ga0134359_10265691	F105380	MSILELDSSQYVKQGRIFKKFDSSLLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGGRLVYNRL