3300014083: Fecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1773

Overview

Basic Information

• IMG/M Taxon OID: 3300014083
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118649 | Gp0138570 | Ga0120366
• Sample Name: Fecal viral communites from wild urban brown rats in Berlin, Germany - Mu/10/1773
• Sequencing Status: Permanent Draft
• Sequencing Center: Freie University Berlin
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7119225
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Viral Communites From Wild Urban Brown Rats In Berlin, Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal → Fecal Viral Communites From Wild Urban Brown Rats In Berlin, Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany: Berlin
• Coordinates
  • Lat. (^o): 52.529611
  • Long. (^o): 13.401343
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048027	Metagenome / Metatranscriptome	148	Y
F057003	Metagenome / Metatranscriptome	137	Y
F082826	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0120366_100125	Not Available	2021
Ga0120366_100387	Not Available	1246
Ga0120366_100399	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1222

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120366_100125	Ga0120366_1001252	F048027	MEKSSTKKTLDLRVRQIAKNNSGKGIGMPNWFTLPQYKEKRLLHIDVCKKLTELSEANDNYPITYLVYFAVGKNAHRLPTFLGGYEKIDEKKANTIFSWLRLFANHNDNLSLFRNPNLAHALCRFYDKYSTRTKDFKDALSKYEKNPKVKNFDMVAKGLGIAKEKKADVEVEESVEMAAVMA*
Ga0120366_100387	Ga0120366_1003871	F082826	MSRYTIELNYNASISFEVEADNEGDALDKARDQAEEADIREFAIGHENESRVLRER*
Ga0120366_100399	Ga0120366_1003991	F057003	MPNFIDLSNLTYCGAEAQEIFSKDIYDIDLRQYGITFMDGVKGKVKLYNGEIGDAWQVYTCPFTPAGAASLAESFIEPAAIKVNQENCYDTFWNTFLVDQTEISLRGGIPQTFGDWYFGKLRQKMAKEYQEIFWQGDKARTASTKTYLKVTDGIEKKMSALPSGNKYTVSAFTVDNIIEQVEAIILKGIDVANAAEVDTEGYKVFMNHADVRVLEIALGKLCCGNSMNDRFANYGRENGRIFVMGYEIVPSMIGKNKVVFGPARNLVLGYDTFDSHIEYKLIDMRETTGDNMFRVLAISNIAVGVIMPELFVYGS*