3300014037: Human oral microbial communities from Los Angeles, CA, USA - S21-04-R

Overview

Basic Information

• IMG/M Taxon OID: 3300014037
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113963 | Gp0134646 | Ga0119816
• Sample Name: Human oral microbial communities from Los Angeles, CA, USA - S21-04-R
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Los Angeles
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 243037019
• Sequencing Scaffolds: 11
• Novel Protein Genes: 15
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Los Angeles, Ca, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051213	Metagenome	144	N
F063778	Metagenome	129	Y
F070224	Metagenome	123	N
F077403	Metagenome	117	N
F084342	Metagenome	112	N
F084362	Metagenome	112	N
F092230	Metagenome	107	N
F101358	Metagenome	102	Y
F103436	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119816_1000069	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	113339
Ga0119816_1000160	All Organisms → cellular organisms → Bacteria	79335
Ga0119816_1000797	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	27607
Ga0119816_1002331	All Organisms → cellular organisms → Bacteria	11748
Ga0119816_1008592	All Organisms → cellular organisms → Bacteria	3969
Ga0119816_1015147	All Organisms → cellular organisms → Bacteria	2439
Ga0119816_1030574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	1326
Ga0119816_1036833	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1120
Ga0119816_1041455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1007
Ga0119816_1041979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	996
Ga0119816_1052363	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	814

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119816_1000069	Ga0119816_100006914	F022002	MSRRLALTLGLLLALLLSFPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFDYEGHSMSKNAYIAYTDLELERARSAEKESEN*
Ga0119816_1000069	Ga0119816_100006915	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHNFEDDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0119816_1000069	Ga0119816_100006916	F022002	MKNIYSPSFRSMSRRLALTLGLLLTLLLSFPAHAQDGQSEVPINRTISGFTLGVTTPAQARAVIQRQGGKIIRTEGTQAGSDEQAYAVEGLKYARRSTFLVTLHFCKGHLRKIAFVFDKLDVLEQIESELENKYGMMAEGKETSKMKSKFIFDAFTHLEVVRSFKYEGHVGFEYAYISYTDLELDRAYSAEKESEI*
Ga0119816_1000069	Ga0119816_100006939	F077403	MCTVHAEERISVHFEVRWHRERNPMDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPRWSTNALRFYKERERRHMTHQVLVWDQAWVVDLEPSIVDGLPKPHLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSMLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYTLPDRYEGYQLYQGLVRGDSIWIEM*
Ga0119816_1000160	Ga0119816_100016053	F101358	MTEKYSASHDAENQAPPPLPPQPEYLLTQPITADGAPQERATHPDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDEEIITEDGVTLMRMTKLVNRSNIHRLEKCVPLAVLQEQNIDFTNAYLQRAYGVIVKDGRLQPVADATHAASQSSATEQETEVLPAQGDDTYEHLSGDSARQLVGSVAAKASGEVDNSLLVRRALKR*
Ga0119816_1000797	Ga0119816_100079725	F070224	MKRLLFLLLTLLHCTAWSQGYNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDENNIIIVNVGDPLVIENFFAYYAAEFPKMKEYELYYKGTGEEITKEDFDSIKFTRMPMALREIKKYKLPRTRRTLREVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYHHPEAYYTVH*
Ga0119816_1000797	Ga0119816_100079726	F070224	MKRLLFLLLTLLHCTAWSQVYNAPDSLYVASGAVYIPPISGEPIYLLASPLHPGKIRGSKIRTRDWVKVDFSDQKNLHIIGFGDSLILENRLVYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFSRMPMALREIKKYKLPRTRRSSGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYDHPEVKIIH*
Ga0119816_1002331	Ga0119816_10023312	F051211	MRVKKAIKIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQRYERHVILRVFIDGSTYDIDPSIDIRLAPTLTIAHWDGTSSTATMASLKHLRIYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQSS*
Ga0119816_1008592	Ga0119816_10085927	F049707	VVSEYKSPHNDGHDPYILIWEYGTEVQQAEFTERWAEYEPDTGWTVWYFRLDDGRVMTFRALEWEQKDDVNHLTTIYFTPKQKENS*
Ga0119816_1015147	Ga0119816_10151473	F084362	VTAPQTEEAGGHAMSLMNCTFTVRWSDEKNKPHAKTYATEADAKRAKKWLLERGVRSVDIAVKINNKPAGSLKDDKPSETEAEQKGFWWER*
Ga0119816_1030574	Ga0119816_10305742	F063778	MPETISEGAQQKLLQQLQDALGLVADADTSALDVAAITHSAADGHQLTEVMLQEMTVARGYLKSCTDQIEYAISSIEAIPLDPPPED*
Ga0119816_1036833	Ga0119816_10368331	F051213	MNLYKIFGALILALSFVFTSCDWVANEPTIEGDHFKYFDSSAQRKSFRVVNASGKRYNHKVDWHIIGITQLDSDTFFTKKVDTLSNGNLKISYDWVSFTVKERKSVIEVEVQKNETGQARSVFFATSNSRYQAHLPNMIITQRAK*
Ga0119816_1041455	Ga0119816_10414551	F103436	MVTSKDGFCDKSDAEILESLKAWVMKCDVKYVKSDALKKIDSAFALWANAQYVSALRLLDENEVFLKKSDWPYYALGIQILKVRKHEFF
Ga0119816_1041979	Ga0119816_10419792	F092230	MVDKLQTHLLKAFLPLFIVCIIFVAFFRQIDCGGEGGYAFQISEWGAKLKNIYGTDFINKEIIVRDNTVQVDGIRCLYAVNRNEDGLSIYLLLSGGEYLTHNYVGSSFVKFSHSSEYSNMAYGEGSVEVSDSTSTGEVQNTEEKEALNKVDEAINNMRHLFASAIMVNLRVVELYKILTGCMILIAIVVIAGYYSY
Ga0119816_1052363	Ga0119816_10523631	F084342	KLFLLGGYLAIPICRPFFAKALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE*