3300013860: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In3 SAF170 SPAdes reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300013860
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095512 | Gp0111873 | Ga0181456
• Sample Name: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In3 SAF170 SPAdes reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 12258806
• Sequencing Scaffolds: 8
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Corallococcus → unclassified Corallococcus → Corallococcus sp. AB038B	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: USA: Jet Propulsion Laboratory, Pasadena, California
• Coordinates
  • Lat. (^o): 34.1
  • Long. (^o): -118.1
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003133	Metagenome / Metatranscriptome	505	Y
F017428	Metagenome	240	Y
F028713	Metagenome / Metatranscriptome	190	Y
F034461	Metagenome / Metatranscriptome	174	Y
F046363	Metagenome / Metatranscriptome	151	Y
F065766	Metagenome / Metatranscriptome	127	Y
F072954	Metagenome / Metatranscriptome	120	Y
F093243	Metagenome / Metatranscriptome	106	Y
F100750	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0181456_100061	Not Available	12733
Ga0181456_100074	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	11754
Ga0181456_100125	Not Available	10044
Ga0181456_100227	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	7743
Ga0181456_100428	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	5557
Ga0181456_100946	All Organisms → cellular organisms → Bacteria	2695
Ga0181456_101741	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1307
Ga0181456_104086	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Corallococcus → unclassified Corallococcus → Corallococcus sp. AB038B	574

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0181456_100061	Ga0181456_1000619	F028713	VRDMIEDKKVLLVKVDTLKNTADALTKSVSSEKFSCCRETMGISGLKND*
Ga0181456_100074	Ga0181456_10007417	F100750	MEHIEDFQKLNVRVKYIPKEHRIDVFIWTLKDNIQHEDLLWEPDSLEKELRLARKMERKIMATRKPTTHNYKEGSVVSPSLPQPTRLTPQKLEEKKEKELCYNCDNKYTKVISVLRRNYFT*
Ga0181456_100125	Ga0181456_1001259	F034461	MLGYDLDIIYRKGKKIFVADALSRKDGDVEALFCAISIIQLDWINEARDEWKKDKEVWPLIQKL*
Ga0181456_100227	Ga0181456_10022710	F046363	MVLDASACINMYCNIERKIMKNQVGSPSFRVQGKISVHMCFMCYALALFIFFV*
Ga0181456_100227	Ga0181456_1002272	F046363	MVLDASTCINMYFNIERNIMKNQAGSPGFGIQGKISVHMCFMYYALTLFIFFV*
Ga0181456_100313	Ga0181456_1003134	F072954	LQQTREEVYQRTQVLQHKLKKIFDKRTKAEDFFMENKVLRWDSRREDKGKHGKFDFLWKGPYIIHVVQGNNTYFLKSLDGTNTEEGLVNGRMLKHYFDPL*
Ga0181456_100428	Ga0181456_1004283	F093243	MLLSYIPTEDQDDDILMKALTRSKFEYHQGRIGVFDNPYLVEREC*
Ga0181456_100946	Ga0181456_1009462	F003133	MSEGIDKSEGRKGAAKLLGGRISCIVGILFGVGGILFALLDASANVSAGAVGAALGVLGYFFGARRLGAATIVLGVIAVFFMAAAATGLIPGVEPLGHGYD*
Ga0181456_101741	Ga0181456_1017412	F065766	MGKEKKGEGVGDPIKILFKEALEKQRNAMMEKNS*
Ga0181456_104086	Ga0181456_1040861	F017428	QLRKANQKKILPMGRLQGVIVDIEGVSMQTNFEVIEIVDDSNPYPTLLGIDWATDMNGIINLKRQKMMLENKSLWVIVPLDLVEGERYTEPMCNEESDDDVDCIY*