3300013830: Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_1239

Overview

Basic Information

• IMG/M Taxon OID: 3300013830
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118654 | Gp0138582 | Ga0120377
• Sample Name: Sheep rumen microbial communities from Wyoming, USA - O_aries_Con_1239
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Missouri
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 181596033
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-78	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ruminant Gut Microbial Communities From Various Locations In Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen → Ruminant Gut Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: USA: Wyoming
• Coordinates
  • Lat. (^o): 41.314168
  • Long. (^o): -105.584589
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035626	Metagenome / Metatranscriptome	171	Y
F067315	Metagenome / Metatranscriptome	125	Y
F082826	Metagenome / Metatranscriptome	113	Y
F097402	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0120377_1002831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10159
Ga0120377_1016792	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1561
Ga0120377_1031178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	844
Ga0120377_1038388	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-78	691

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120377_1002831	Ga0120377_100283116	F067315	MNKLEDFSNWLQIFSFLILIEDFNNTDLMKYLAHQDDLLNKIIDQNNELITLLKGGK*
Ga0120377_1016792	Ga0120377_10167921	F082826	MANKYTIEFNYNASIVVDVEGEFHDEGEALDKAREIAEDADINEFTIGEERESKILNVR
Ga0120377_1031178	Ga0120377_10311782	F097402	MTNLDHIQSLIHHGAQLRGEDGSLTPLTKAFYHNAVEACHTGGYNAATYDLVLPGIDSELWLAIWKDGHADSGSPKSICACLAR*
Ga0120377_1038388	Ga0120377_10383881	F035626	MAPLIINNDAVQGETFLPGQIFVFGGFALRANSLGHLEQIESYAPGHQVRFGSLNYTADIRGDLIFDRFEPQPSAPHCHDGHDLALLLDSALEAAPASASTLNSEPTAPIEDGRLDATSGAAIQTAIEPNTNPVLCEA