3300013762: Beach sand microbial communities from Municipal Pensacola Beach, Florida - OS-J598

Overview

Basic Information

• IMG/M Taxon OID: 3300013762
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118446 | Gp0134499 | Ga0116693
• Sample Name: Beach sand microbial communities from Municipal Pensacola Beach, Florida - OS-J598
• Sequencing Status: Permanent Draft
• Sequencing Center: Georgia Institute of Technology
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 226239734
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Beach Sand Microbial Communities From Municipal Pensacola Beach, Florida
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Sand → Unclassified → Beach Sand → Beach Sand Microbial Communities From Municipal Pensacola Beach, Florida

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → beach → beach sand
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Municipal Pensacola Beach, FL
• Coordinates
  • Lat. (^o): 30.3262
  • Long. (^o): -87.1745
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001186	Metagenome / Metatranscriptome	754	Y
F001506	Metagenome / Metatranscriptome	681	Y
F010714	Metagenome / Metatranscriptome	300	Y
F046726	Metagenome / Metatranscriptome	151	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0116693_1000053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	4735
Ga0116693_1019796	Not Available	657
Ga0116693_1031803	Not Available	584
Ga0116693_1041694	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	547

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116693_1000053	Ga0116693_10000533	F001506	MNRILYENRCRCNEEFSITKKRKSPTRSEGKPLQYPKSDEIISKTFQIKYPNKLSLTAKFILNSFQNKYIYYAIDDILDTRTERENLLAILYSPLLSLQNNFSVNFFDIWIREVYIEEVAKTNRFLSKNSQTLDQFSYITIQFFYKTKVPVRKQESLW*
Ga0116693_1019796	Ga0116693_10197962	F046726	LGRISEQEKIEIIQRGFQLQAEGKISLKKYYESTDPNSLVQSKGYSIKYESIRRTKLYQQLKPSNN*
Ga0116693_1031803	Ga0116693_10318032	F010714	MRVKLQLVISHDDGHEETITDVITLNKNHKRIEHLGLSLAESKQLLSTVSPGSSGR*
Ga0116693_1041694	Ga0116693_10416941	F001186	MTQQDSWTTRLKNYIADVLPWTHGHQLKGITTFVGAILEKQTGNQAELARGQGNQEAAVKRLSRLLHNARLGPHRLADSVLAQALEQLPAKGTVRLAIDWTIEAPHHLLVVSLLTGGRAVPIYWRADDAGGVEGGLRRSEEGGMTAVS