3300013759: Intertidal thrombolitic mat microbial community from Highborne Cay, Bahamas - Thr-A

Overview

Basic Information

• IMG/M Taxon OID: 3300013759
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118601 | Gp0137336 | Ga0119972
• Sample Name: Intertidal thrombolitic mat microbial community from Highborne Cay, Bahamas - Thr-A
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Florida
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 265928561
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus cobalaminigenes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Intertidal Thrombolitic Mat Microbial Community From Highborne Cay, Bahamas
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Microbialites → Intertidal Thrombolitic Mat → Intertidal Thrombolitic Mat Microbial Community From Highborne Cay, Bahamas

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Surface (saline)

Location Information

• Location: Bahamas: Highborne Cay
• Coordinates
  • Lat. (^o): 24.43
  • Long. (^o): -76.49
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001506	Metagenome / Metatranscriptome	681	Y
F065810	Metagenome / Metatranscriptome	127	Y
F087322	Metagenome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119972_1004056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2742
Ga0119972_1088821	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	536
Ga0119972_1097565	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus cobalaminigenes	513
Ga0119972_1101502	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119972_1004056	Ga0119972_10040563	F001506	MNRILYFFSSRCKEKEEFSITKKRKSTNRSEGKPLKYPSPNDIKVKTFQIKYEKKLSSIAKLTLNSFRNKYLYYAIDDILYLFKSNPIERDNLLAVLYSPVLSLHNNFSINFFDIWIHEIYINEISKVNKFLTTDFQNLEQCSYITIKFLYQTRLPGKKQESLW*
Ga0119972_1088821	Ga0119972_10888211	F065810	ITKKQTKKKRKEGRSIKYPSIEKRISKTFQIRYDKTLSLTAKFILNSFQNKYFYYAIDDILYLLKFDPIERDSLLTVLYSPVISLQNNFSINFFDIWIEQIYINEIEKVNKFLTNDSQNFEHFSYITLTLIYKTSEPVQKLEALW*
Ga0119972_1097565	Ga0119972_10975651	F087322	SCDIYPTSTSVDLQALRFGFVLTLLLVFKMIQAGTGEACFVFFNRRIFLGDDLRAAIDFQA*
Ga0119972_1101502	Ga0119972_11015021	F001506	MNQILFENRYKSNEEISVIKKRKSTSRSEGKPLQYPKSTEIKWKRFQIKYDGKLSLIAKFILNSFQNKYIYYGIDDILYQFGLDSNEYETLLAILYSPVISLQNNYSVNFFDIWLSEIYIEEESQQINFFPIQGRKSMQLQCSFKVRRKK*