3300013749: Human oral microbial communities from Los Angeles, CA, USA - S13-03-R

Overview

Basic Information

• IMG/M Taxon OID: 3300013749
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113963 | Gp0134629 | Ga0119799
• Sample Name: Human oral microbial communities from Los Angeles, CA, USA - S13-03-R
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Los Angeles
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 131987493
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From Los Angeles, Ca, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Subgingival Plaque → Human Oral → Human Oral Microbial Communities From Los Angeles, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: USA: Los Angeles
• Coordinates
  • Lat. (^o): 34.0722
  • Long. (^o): -118.4441
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F040685	Metagenome	161	N
F053092	Metagenome	141	N
F058221	Metagenome	135	N
F067847	Metagenome	125	N
F094006	Metagenome	106	Y
F097525	Metagenome	104	N
F097527	Metagenome	104	N
F101358	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119799_100012	All Organisms → cellular organisms → Bacteria	257912
Ga0119799_100421	All Organisms → cellular organisms → Bacteria	36428
Ga0119799_100423	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	36236
Ga0119799_101575	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	10777
Ga0119799_101975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	8552
Ga0119799_102190	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7641
Ga0119799_111915	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	1482
Ga0119799_112450	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1425
Ga0119799_113989	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1291
Ga0119799_128719	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	682

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119799_100012	Ga0119799_100012123	F101358	MTEKHSASLPPRQPEHLLTQPITTDGTPKERATHLDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDVEIIDKDGTVLVRMTKPVHRSNIHQLGKCVPLAVLQEQNLDFTNAYLQRAYGVMMEDGRLQPVADTTHTASQSSATEQETEVLPAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNSLLVERVLGRVKQ*
Ga0119799_100421	Ga0119799_1004212	F018385	MAEYENQWGPYKENSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*
Ga0119799_100421	Ga0119799_1004219	F027205	MRAVKESEEFERKALAAARKRDRAEGKPPRDVLHPDHKPGREIVLDYIKNPERRRTPRCSVRLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0119799_100423	Ga0119799_10042315	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHPPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0119799_101575	Ga0119799_1015757	F094006	MWGTLEPAGPTGALYESTVCVEAHIGELQAGGIARRSLFTFGGRHLLAVAELGAEAPHAIDMYDIALCKPLSELFAEELEYAFNFGA*
Ga0119799_101975	Ga0119799_10197513	F097527	MIYFKMEKIGNSTYNKEKKTRSENLVFITIPAAGVEPARPCGHWI
Ga0119799_102190	Ga0119799_10219010	F067847	MFSHIIRVKGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQRDPKYKELDDKLKETELNNL*
Ga0119799_111915	Ga0119799_1119152	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISVDKEKSTEIDFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYELTFPLDDKTLAMIIKELGEAVASFKKE*
Ga0119799_112450	Ga0119799_1124502	F030786	MLVVMVVTSSLQMFLKNGSATKGGNAMGAKKISLADITEGDDSTEDVLKVKYFDDDGVDKIFENNNNRILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDS*
Ga0119799_113989	Ga0119799_1139894	F058221	MGKIKNFQDLKNQKEELRAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLAEKFLFPSLKVGSAKLLSNVLLKRTKPSMKKTLIGLGVVVLAPVVIMRIKKIL
Ga0119799_128719	Ga0119799_1287192	F040685	FALSFASISLHGQEKIQQVEVHIFGGMALYSRQCTLNSLKKEFNTKVLLRQNEELPKEISLPNTPKNWEVFIKKINLDKFKELKDGPSEQASDGQDKIIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKGIYE*