3300013215: Human skin bacterial and viral communities - University of Pennsylvania - MG100470

Overview

Basic Information

• IMG/M Taxon OID: 3300013215
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118646 | Gp0138449 | Ga0118560
• Sample Name: Human skin bacterial and viral communities - University of Pennsylvania - MG100470
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Pennsylvania
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 39155758
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
Not Available	5
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Skin Bacterial And Viral Communities - University Of Pennsylvania
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Skin → Unclassified → Unclassified → Human Skin → Human Skin Bacterial And Viral Communities - University Of Pennsylvania

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): 3.9624

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003252	Metagenome / Metatranscriptome	497	Y
F003470	Metagenome / Metatranscriptome	485	Y
F009273	Metagenome / Metatranscriptome	320	Y
F047169	Metagenome / Metatranscriptome	150	Y
F049753	Metagenome / Metatranscriptome	146	Y
F060256	Metagenome / Metatranscriptome	133	Y
F067490	Metagenome / Metatranscriptome	125	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0118560_101256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2315
Ga0118560_101481	Not Available	2108
Ga0118560_102071	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1743
Ga0118560_110836	Not Available	706
Ga0118560_118273	Not Available	534
Ga0118560_118844	Not Available	525
Ga0118560_120557	Not Available	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0118560_101256	Ga0118560_1012563	F049753	MHRLGQQMKRQFSVRSLRYVGAFLSWGTTFVLVAVGFIFFRANDLTQAWTMLSAVFTPAAYGRFAMPRTFYMLTPTMAIGYFVVTAGHALLLSWRARYREAMREGRESAEGKWPVTVTNFPLMIGASFDFFTGRLWWWLAPALSIVALLVGLVMYTRRAVIAVTPFMYALF*
Ga0118560_101481	Ga0118560_1014811	F003252	MGNGTKTTRENRTITVDFHDESNYFQLICDGTAFV
Ga0118560_102071	Ga0118560_1020711	F003470	MRRFGRQCRGQGQVFVKIVRQTEQQLLTLGEPIKVLAQQAQQVLEQATTLRASTRERLAHALHAAVDAHTHIRTQSTRLTQGKKLRHCKIVNAYDPTIAPILKGKSNCPAQFGRKPGLVSEPATGFIFATIVPKGNPSDPGYVLPLLDKVEAATQRVRTAPKRHVYSVAGDLGGNDVSLRQALHARGILTVGIPKTIEPIQGNPNPAEVRTILAEAGLLRQRTPHQVHMACASGYSRPVVESHIASLLARGAGQVRYKGHPGAVLQQGMTVLAHNGATLVRIRQQHLSKRAQKFRRLLGLRHRKDNEINEQKN*
Ga0118560_110836	Ga0118560_1108361	F009273	MYLLDPQQGEARRDLVRGSVSDYGRQTGAFAHETGGTRGRQEQGVLATARRPFRRQPGLGERLLAHAEQLGTTTGMVLVGCVGLGVGLGYLWAHQGSPEPRVQLREKARTYWRPTETRQAHQRALSRHWRFFQGRDTPRV
Ga0118560_118273	Ga0118560_1182731	F060256	VPSTIVNVRLPLLLVAELDRYLDRLESQTGLKANRGMIARRALELFLASHASVEATAREG
Ga0118560_118844	Ga0118560_1188441	F047169	MCIRIQRSRATIKDLHHRLQHAYRRDAARLVRRITVRIDLLVHDVPVARLCERWGLSPACLYAWHKAFLLHGRDRLV*
Ga0118560_120557	Ga0118560_1205571	F067490	GRLFINEAQTGVMAWWSMGRWTDRAAREAIIAQAKTMTLADFRRWFARHEASFLVD*