3300013117: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 900m, 250-2.7um, replicate b

Overview

Basic Information

• IMG/M Taxon OID: 3300013117
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118094 | Gp0137034 | Ga0171658
• Sample Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 900m, 250-2.7um, replicate b
• Sequencing Status: Permanent Draft
• Sequencing Center: Georgia Genomics Facility
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 510447161
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Alt. (m): N/A
  • Depth (m): 900

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022812	Metagenome / Metatranscriptome	212	Y
F023595	Metagenome / Metatranscriptome	209	Y
F029984	Metagenome	186	Y
F036306	Metagenome / Metatranscriptome	170	Y
F036767	Metagenome / Metatranscriptome	169	Y
F089552	Metagenome	109	Y
F099229	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0171658_1051222	All Organisms → cellular organisms → Bacteria	2035
Ga0171658_1099000	Not Available	1280
Ga0171658_1116798	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1137
Ga0171658_1123695	All Organisms → cellular organisms → Bacteria	1092
Ga0171658_1169415	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	883
Ga0171658_1221588	Not Available	722
Ga0171658_1230653	Not Available	696

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0171658_1051222	Ga0171658_10512222	F023595	DFFNHFIVGVSPQMVDFGSGQGLSDFETGGIACYFEDFKRAKTPPRAGRCRLWIDTN*
Ga0171658_1099000	Ga0171658_10990002	F029984	MSGYLERIRNIYLSMYYIFTYMRTNIIIDENLKGKWWDIKKEAAKLNMKIGEYIIFCHEIRKKSEKKNKLLEILEKPLFGGAKNIDAVKASKSMWKI*
Ga0171658_1116798	Ga0171658_11167982	F036767	MRKNSCGKVDILKTDYDKNISKVPELIGKHPGVIAPVTLYKINPLEFVKPASASRVSGTMEVEVRIREGNEELEKNIKKIVLTIDGKRFEFEKSPYKVDFDTLHARYRIITLKAEAIGKNEDQEDAVLASFYTNVIAENGELDKTKPLLLFGGVLEPKIENRREPWTKEMYSMAYTFSEKMMGHLMHYGFVPSFLKEVDQFAVLIDPTQLDKG
Ga0171658_1123695	Ga0171658_11236952	F089552	MSINRVSEYRRILKSFEVFEVPVKLQELVVEAVNSKEWDWFEDCDGCTSVSELHWPTKYFPPCLRHDFDWIRGKGNWAASRLFYELQRAYGVPVWRSALRAGAVTVAWYGWARWRRR*
Ga0171658_1169415	Ga0171658_11694151	F036306	MKVVIQLTKAEEAKALPVLLRHSPGTVLPNRTYVINEEASMKLREAGVRFVELSRESDAPNLEEVGSGERI
Ga0171658_1221588	Ga0171658_12215881	F099229	MELDIDKIVELGKVLLNTPTLRSIYKDKFEINAIDFEFVEKTSNSQFTTKYEHYIFKVTLYTDIPLNFDKEIKNGEIEGYDEIENEIWEYGIDPFYLADIIIPEQILNVILPKGKNQPKVAIELSI
Ga0171658_1230653	Ga0171658_12306532	F022812	LLQAIRKLALRAQTVRIADLPLRQDLLAKNVLMTAQRNLCLGNNLLNIDDR*