Basic Information | |
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IMG/M Taxon OID | 3300013046 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114821 | Gp0119656 | Ga0079038 |
Sample Name | Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaT (Metagenome Metatranscriptome) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 22198236 |
Sequencing Scaffolds | 65 |
Novel Protein Genes | 76 |
Associated Families | 43 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 55 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 2 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 2 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei | 1 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon | 2 |
Ecosystem Assignment (GOLD) | |
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Name | Freshwater Wetland Microbial Communities From Ohio, Usa, Analyzing The Effect Of Biotic And Abiotic Controls |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands → Freshwater Wetland Microbial Communities From Ohio, Usa, Analyzing The Effect Of Biotic And Abiotic Controls |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | freshwater biome → wetland area → mud |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
Location Information | ||||||||
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Location | USA: Ohio, Lake Erie, Old Woman Creek | |||||||
Coordinates | Lat. (o) | 41.384 | Long. (o) | -82.513 | Alt. (m) | N/A | Depth (m) | 0 |
Location on Map | ||||||||
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