Sample 3300012992

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300012992

3300012992: Pig viral communities from ears skin of healthy adult pig - Individual 0

Overview

Basic Information
IMG/M Taxon OID	3300012992 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0126266 \| Gp0177337 \| Ga0157150
Sample Name	Pig viral communities from ears skin of healthy adult pig - Individual 0
Sequencing Status	Permanent Draft
Sequencing Center	Autonomous University of Barcelona
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	186643651
Sequencing Scaffolds	25
Novel Protein Genes	25
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
Not Available	13
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1
All Organisms → Viruses	3
All Organisms → Viruses → unclassified bacterial viruses → virus sp. ctBM815	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → Suoliviridae → Oafivirinae → Chuhaivirus → Chuhaivirus simiae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctjsp22	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Pig Viral Communities From Oral Cavities And Ears Of Healthy Adults Pigs From Denmark
Type	Host-Associated
Taxonomy	Host-Associated → Mammals → Skin → Unclassified → Unclassified → Pig Ears Skin → Pig Viral Communities From Oral Cavities And Ears Of Healthy Adults Pigs From Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	Denmark
Coordinates	Lat. (^o)	56.0	Long. (^o)	10.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028722	Metagenome / Metatranscriptome	190	Y
F036964	Metagenome / Metatranscriptome	169	Y
F042680	Metagenome / Metatranscriptome	157	Y
F042737	Metagenome / Metatranscriptome	157	Y
F048027	Metagenome / Metatranscriptome	148	Y
F053097	Metagenome / Metatranscriptome	141	Y
F057003	Metagenome / Metatranscriptome	137	Y
F057815	Metagenome / Metatranscriptome	135	Y
F063246	Metagenome / Metatranscriptome	129	Y
F082004	Metagenome / Metatranscriptome	113	Y
F082826	Metagenome / Metatranscriptome	113	Y
F082887	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0157150_1001197	All Organisms → Viruses → Predicted Viral	3137	Open in IMG/M
Ga0157150_1003763	Not Available	2020	Open in IMG/M
Ga0157150_1003933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1985	Open in IMG/M
Ga0157150_1005241	All Organisms → cellular organisms → Bacteria	1778	Open in IMG/M
Ga0157150_1008215	All Organisms → Viruses → Predicted Viral	1502	Open in IMG/M
Ga0157150_1009044	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1452	Open in IMG/M
Ga0157150_1011949	Not Available	1303	Open in IMG/M
Ga0157150_1015612	All Organisms → Viruses	1178	Open in IMG/M
Ga0157150_1022905	Not Available	1018	Open in IMG/M
Ga0157150_1023069	All Organisms → Viruses → unclassified bacterial viruses → virus sp. ctBM815	1015	Open in IMG/M
Ga0157150_1024353	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	994	Open in IMG/M
Ga0157150_1032494	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → Suoliviridae → Oafivirinae → Chuhaivirus → Chuhaivirus simiae	890	Open in IMG/M
Ga0157150_1056440	All Organisms → Viruses	719	Open in IMG/M
Ga0157150_1058181	Not Available	711	Open in IMG/M
Ga0157150_1061426	Not Available	696	Open in IMG/M
Ga0157150_1062740	Not Available	690	Open in IMG/M
Ga0157150_1070197	Not Available	660	Open in IMG/M
Ga0157150_1070226	Not Available	660	Open in IMG/M
Ga0157150_1074380	Not Available	646	Open in IMG/M
Ga0157150_1085085	Not Available	612	Open in IMG/M
Ga0157150_1085991	All Organisms → Viruses	610	Open in IMG/M
Ga0157150_1108519	Not Available	556	Open in IMG/M
Ga0157150_1111165	Not Available	551	Open in IMG/M
Ga0157150_1127101	Not Available	522	Open in IMG/M
Ga0157150_1133309	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctjsp22	512	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0157150_1001197	Ga0157150_10011972	F057003	MANFIDVSSLTYSGKEAQEIFAKDIYDIDLRNYGVTYMDGVKGKTKIYSGDMGEAWQEYTCPFSPKGKVSLAESYIEPKAIKVNQENCYDTFWNTFLVDQTSISLAGGIPQTFADWYFDRLRKQMAKEYQEIAWQGDTAHTATTKTYLKVVDGWEKQLKAKAQKIDVTAFTVSNIVSQVEALIMKGLEKASAEDVPTDGYKVFMNYSDVKVLEVALGKLSVGNSANQVFGNYSKNADGTINVYGFQIVPTMMSRNKAVFGPARNLVLGYDTFDSHIQYKLIDMRETTLDNTFRVAAISNIAVGVVLPELFTILG*
Ga0157150_1003763	Ga0157150_10037633	F082826	MARYKVECNYNASIIANVEANDEGEALDKARDYAEDANIRQFTIGSERESRILRTE*
Ga0157150_1003933	Ga0157150_10039334	F036964	MISFLKIAFPALMVTGALGSLVVNIISKGDKATSLQWIGASLLYTALLFRNK*
Ga0157150_1005241	Ga0157150_10052413	F036964	MNNLVDILKIVFPALMVTGAAGSLIVNICTKGDWPVSLQWFGAALLYTALLFRNK*
Ga0157150_1008215	Ga0157150_10082152	F082826	MRYKIQCNYNAFITVDVEANDEGEALDKARNYAEDADIRQFNIGEEKESRILETE*
Ga0157150_1009044	Ga0157150_10090442	F057003	MANFIDVSSLTYSGKEAQEIFAKDVYDIDLRNYGVTYMDGVKGKTKIYSGDMGEAWQEYTCPFSPKGKVSLAESFIEPKAIKVNQENCYDTFWNTFLVDQTSISLAGGIPQTFADWYFDRLRKQMAKEYQEIAWQGDTARTATTKNYLKVVDGWEKQLKAKAQKVTGETFTVDNIIGQVEALIMKGLEKANAEDVPTDGYKVFMNYGDVKVLEVALGKLSVGNSANQIFGNYSKNADGTINVYGFQVVPTMMSKNKAVFGPARNLVLGYDTFDSHIEYKLIDMRETTLDNTFRVAAISNIAVGVVLPELFTILG*
Ga0157150_1011949	Ga0157150_10119492	F048027	KGVGMPKWFTLPQNKERRLKHIDICKKLCELSDKYSKYPITYLVYFAIGKNAHRTPTFLNGYTKIDEKKAVTIFSWLKLFAKHNKNPKLFRNANLAHALCRFYDTYSKNTNDFKAALEKYEPNEKVKDFTMVAKGLGITKKPKNEEALTEEIVNEPSVAYS*
Ga0157150_1015612	Ga0157150_10156124	F053097	PPFKDFYNKSKDKQDAIKKIEFIIWRYKWNTPYEAYPEKERTWRVAKDVFNDENYVPDADVQELAKRFNEF*
Ga0157150_1022905	Ga0157150_10229051	F048027	MTKKVTETKKAKFSLDTRVRLVAENEGGKGVKMPVWFNLPQHKELRQQHIDICKGLVALSVANDNYPITYLVYFAVGKNAHRKEVFEDGYTRFDEKKAEKIFSWLKLFAKYHKNAKLFRNPNVAHALCRFYDKFSTKTKDFKAAMELMESNPKVDVKNAKAIVDGMGIAKRTEESELAEAETAMEPAVVTA*
Ga0157150_1023069	Ga0157150_10230691	F053097	MFDIIQNKIQLSTEDLAIPPFKDFYNNAKDKQDALKKIEFIVWRYKWNSPYEAYPEKERTWRVAKDVLNDENYKPDDVIKELAKR
Ga0157150_1024353	Ga0157150_10243532	F053097	MFDIIQNKIQLSTEDLAIPPFKDFYNNAKDKQDALKKIEFIVWRYKWNSPYEAYPEKERTWRVAKDVLND
Ga0157150_1032494	Ga0157150_10324944	F053097	MFDIQGSKIQLKTEDLAIPPFKDFYNKSKDKQDAIKKIEFIIWRYKWNTPYEAYPEKERTWRVAKDVFNDENYVPDADVQELAKRFN
Ga0157150_1056440	Ga0157150_10564403	F053097	MFDIQGDKIRFNTEDLAIPPFKDHYNNAKDKGQALKEIEYVVWLHKWNTPYEAYPANQRAGIVAKDVFKTDKYIPSDEVKMLE*
Ga0157150_1058181	Ga0157150_10581812	F057815	MERKKFKDSDILKAMAMHLDEDSVVFGTNCHYAVGAYYDITKISSVFGDKDYNSQSNIDDASGTTAAELYRTDNNELPEGLQKAVWLKEY*
Ga0157150_1061426	Ga0157150_10614262	F082826	TIQMNYNASIVVEVLANDEGEALDKARDKAEDADIRQFTIGSENESKILRAD*
Ga0157150_1062740	Ga0157150_10627401	F063246	MAKLKIEINDVNNIRDLLQNAYNLADEQIVQAQNEINKLSTSSNLVDEPMDARAKYAKAINDYLSMKDKAISKKIDIAKVLTEIYHHNGDVGGALNDDSMKNISFDFKDIRKMVDESMADKEKTKTIELKKK*
Ga0157150_1070197	Ga0157150_10701971	F082826	MKRYTIEFNYNASIVVNVEGDFNDEGEALDKAREIAEDADINEFTIGEEKESKILNLS*
Ga0157150_1070226	Ga0157150_10702262	F042737	MKLTEKSMEVYNYLKENGGRVSIEELAAGLNRTARSVNANVTDLCSEKKGLAMREKVKGEGEDAKDITYVVLTEAGKTFVPSED*
Ga0157150_1074380	Ga0157150_10743802	F082887	MKKIKTIAKYTTNILGIIGAIITGINQVEGISIPYAVQIVGVISVVQGVIGSYLLGNKAVKRRFNYE*
Ga0157150_1085085	Ga0157150_10850851	F028722	NTVQNGQTCLEKRGMDERHVEITRSDYNIENQYGATHKDALSDGDAQGKGTGHGGHTHYLPDCTKPTTRIDYSNFDTENGGGCYDIKGRNGISGRERALAISMYNKEVPYGAKLVDTTANVNDGQYFVGQQIGNPNSNCG*
Ga0157150_1085991	Ga0157150_10859911	F053097	TIYNIMFDIQGDKIKFSPEDLAIPPFKEYYEAAKDKSQALKEIEYIVWLYKWNTPYEAYPIDKRPSIVGRDVFKNDKYEPSE*
Ga0157150_1108519	Ga0157150_11085192	F042680	MIVEDIKPLVKGIAQLQYIMAGGIAVYHITSVDGNKYQIEIDLSDKKDVGETAAFKPTEKGLLLMRWIR
Ga0157150_1111165	Ga0157150_11111651	F042737	MKLTEKSNEIFEYLKANGGRVSIEELANATGRSARSVGANVLDLQKKKLVVREKEEVEGADKPVAYAVLTDEGRNFVPSDDAE*
Ga0157150_1127101	Ga0157150_11271011	F082004	MILHLHLTEDHLKLVRFLNVEDKDDDFLKINKKVMLTMQTHILDDVAMILGLRDKAIKNTEEDADGAAYPDDVEKYMLDTYRYVSDNLYLIETLLHQKVFEGVKVGHYKAKDSDLIWEFCG*
Ga0157150_1133309	Ga0157150_11333092	F036964	MMILKIIFPLLMVIGALGSLIVEVANKGDWATALQWIGACLLYTALTFRNIR*

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