3300012609: Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00357

Overview

Basic Information

• IMG/M Taxon OID: 3300012609
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118444 | Gp0135071 | Ga0120836
• Sample Name: Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal -P00357
• Sequencing Status: Permanent Draft
• Sequencing Center: Weill Cornell Medical College
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 34514529
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides uniformis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa
• Type: Engineered
• Taxonomy: Engineered → Built Environment → City → Subway → Unclassified → City Subway Metal → Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA:New York City
• Coordinates
  • Lat. (^o): 40.52
  • Long. (^o): -74.19
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065766	Metagenome / Metatranscriptome	127	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0120836_104583	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides uniformis	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0120836_104583	Ga0120836_1045831	F065766	MGDEKKDEGAGDPMKILLEEALEKQRNTVMDKFAQILQ*