3300012327: Human skin bacterial and viral communities - University of Pennsylvania - MG100562

Overview

Basic Information

• IMG/M Taxon OID: 3300012327
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118646 | Gp0138212 | Ga0118275
• Sample Name: Human skin bacterial and viral communities - University of Pennsylvania - MG100562
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Pennsylvania
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15251276
• Sequencing Scaffolds: 15
• Novel Protein Genes: 17
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum aestivum	5
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum urartu	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii → Aegilops tauschii subsp. strangulata	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Skin Bacterial And Viral Communities - University Of Pennsylvania
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Skin → Unclassified → Unclassified → Human Skin → Human Skin Bacterial And Viral Communities - University Of Pennsylvania

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020492	Metagenome	223	Y
F020828	Metagenome / Metatranscriptome	221	Y
F027342	Metagenome	195	Y
F059631	Metagenome	133	Y
F067310	Metagenome / Metatranscriptome	125	Y
F076912	Metagenome	117	Y
F081962	Metagenome	113	Y
F083289	Metagenome	113	Y
F092835	Metagenome / Metatranscriptome	107	Y
F094706	Metagenome	105	Y
F098130	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0118275_100226	Not Available	1443
Ga0118275_101223	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii	913
Ga0118275_102068	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum aestivum	770
Ga0118275_102098	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum urartu	766
Ga0118275_102796	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum aestivum	693
Ga0118275_102914	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum aestivum	686
Ga0118275_103059	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum aestivum	673
Ga0118275_103369	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum urartu	651
Ga0118275_103391	Not Available	649
Ga0118275_103676	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii → Aegilops tauschii subsp. strangulata	631
Ga0118275_104003	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum aestivum	613
Ga0118275_104376	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae	595
Ga0118275_104423	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii	593
Ga0118275_104870	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae	571
Ga0118275_105814	Not Available	535

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0118275_100226	Ga0118275_1002261	F076912	LENSTALSNGKGSNADKVQDSETSLLVSKKADKNYLDDSEGTQKSCLDVVFELLATTAGTSSSNSLPESVRLLESQLQVERHRSDVLRQEAEGLRKSLQNSDAYFLVQQQALEDLSAKQEKVNKLAKHLASIMGTQDIVS*
Ga0118275_101223	Ga0118275_1012231	F092835	MNPGVRLRVGHQPSQFWPILARLMDYYSPFWGPEAISTVIEPQGALTCRSSTLAILADSGPFHGLLLTVLGSRSDFHD*
Ga0118275_101223	Ga0118275_1012232	F092835	MNTGVRLCVGHQHSQFWRILAHFLDYYSPFWGPEAISIVIEPEGALMCRSSTLAVLADSGPFHVLLLTVLGFQSDFHD*
Ga0118275_101241	Ga0118275_1012411	F027342	SLERDSKTRESELATALESAKAAKAEAYKALQEIEAVKKIAAGKAFFMQSKHVSVNYLSLTRIRSSPGAFADLLRSVSDAAAFYRAEEGSSTEKVFWSQYAEAGHPVPLSDQLKQLVELHKAAEQAMKGLIVRLWPKEAMPGSYFGLVRRLVDACPWVEVIKHSACIEGARRALARAKVHWGKMDAQKLVTDPPPEGKEHRTPEMYYKSVLKGARTIAGECSKDVIFE*
Ga0118275_102068	Ga0118275_1020682	F020828	MSDQLKQLVELHKAAEQAMKGFIVRMWPGDALPNSYFGLVRRLVDACPRLEVIKRSVCIEGARRAFARVKVQWAKLDAVKLIKEGPPQGKEHRTPEIYYEGVLKGARLVADECSKDVIFE
Ga0118275_102098	Ga0118275_1020981	F059631	QAECGGAMVGKMANVLWLEGSFVETLKGWQSGWFYITERRDPEWVTAPEFRSGPPTRLTSWKETGLSWGSKGEVTGLQTCIQTLVDKQLKLVNIVQVMLIRLILPCQQWAFNLWEFDPARHQTLSRLFDTTYEDAWKVLFKGAEAPASATEDRGFSTQRHACAVSYFYLL*
Ga0118275_102796	Ga0118275_1027961	F083289	EEGDTAYAESVCATEELKFYKDNVDPTDMTSLKKPTTEHEPAMKFKSADETKLVDFVPGDSSQQFSISANLDPK*
Ga0118275_102914	Ga0118275_1029142	F020492	MQASLLAFAILTAEVDTLKQNLEQSEQELGRAKKQLEEKEGKKYLV*
Ga0118275_103059	Ga0118275_1030591	F081962	KTGPRSANLNQNVLTKLKAVYTLVEQLYTGSQRALAVVALSNEVPTHLADVLRRLAVLPQRFQELRRASARAGAIAALSRAKAFLPELDPADIALGYPSLKEDGTPFDQKDFAACVKSVRPVATLIGNDTDLTKYQPGYDAENQRIPTPRYEAVSLIPPTRKHTFAPEVDPAGLIDDEAQFEALSGIDWKSSTFQVMESAGGAERDEPGASTQQAP*
Ga0118275_103369	Ga0118275_1033691	F059631	FYITEPRDPKWAAAPEFRYGTPMQLTSWKGKGLLWGSSEELTGLQSCLQTLVNKKLKLVNVIQVMLVRRILPCQQRAFNLWEFDPAQHRTLSGLFDTTYEAAWRVLFKGAEAPASATEDRGFSTQRPAGEVSYVILYGTLISFIV*
Ga0118275_103391	Ga0118275_1033911	F092835	VRLRIGHQHSQFWPILARFVDYYSLFCGPGVISTINEPWGAFTIWSSTLAGLVDSDAFHGLLLTVLGTQTGFVVVEPQGAFT
Ga0118275_103676	Ga0118275_1036761	F098130	MPGPHPRRRPVRDDVQPTHVRDWAPPGWHWEVLPGGARRLMRNPAPGPVVDPDLVWWRSRGPVSVRREPAPPEVVRRRVREEDEHVHRYMVALEGGRFSNTWQFLQGSHFSYDPVRVPSLWVSTARAAGTASVLDSSIVFDL*
Ga0118275_104003	Ga0118275_1040031	F081962	VVALSNEVPTHLAEVLRRLAVLPQRIQELRRASARAGAIAALSRAKAFLPELDPADIALGYPSLKEDGSAFDQKDFAACVKAVRPVATLIGNDTDLTKYQPGYDVENQRIPTPRYEAISLVPPTRKHTFAPEIDPAGLIDEEAQFEALSGIDWKSSTFQVLGTAGGAERDEPEASTQQAS
Ga0118275_104376	Ga0118275_1043761	F094706	LKGSFEGLKGYAVGRMTKSRRGKLYIDDANWGPDAGSIEYGYRVPFGGIHVFIGKIGEPGPEPDLCADLIETAQRARPARALPALTHAFLGCIHGGLSDRSGSGDETAAGSDGESATDESNSLYQLQDGRLMGCSDGDSIPDPFEPPSWVGIFMAGAQPVQNPAAG
Ga0118275_104423	Ga0118275_1044231	F092835	VRLRVGHQHLQFWPILDRFVDYYSLFWGPGVVSMIDEPLGVLTCRSSTLVVSPDSGPFRGLLLTVLGSRSESHD*
Ga0118275_104870	Ga0118275_1048701	F067310	CGADVALSLVRVHCKEAREDKVAAIKVANTKRHDFQSFMETFIAAATRIADGIDLDEFVEPASPPPAE*
Ga0118275_105814	Ga0118275_1058141	F092835	VRLRAGHQHSRFWSILTRFVHYYSPFWRPEVISMLVEPQGVFTCRSSTLTVLADSGPFHGLLLTVLES