3300012150: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ029 MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300012150
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121619 | Gp0175754 | Ga0153945
• Sample Name: Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ029 MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 176493628
• Sequencing Scaffolds: 29
• Novel Protein Genes: 32
• Associated Families: 29

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. AFS	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	4
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus → Agaricus bisporus var. burnettii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Fungus → Fungus corpus

Location Information

• Location: USA: New Jersey, Wharton State Forest
• Coordinates
  • Lat. (^o): 39.7126
  • Long. (^o): -74.5635
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000488	Metagenome	1084	Y
F000950	Metagenome	822	Y
F003922	Metagenome	461	Y
F004241	Metagenome / Metatranscriptome	447	Y
F005805	Metagenome	389	Y
F008285	Metagenome	335	Y
F008928	Metagenome	325	Y
F010439	Metagenome	303	Y
F013487	Metagenome	270	Y
F017889	Metagenome / Metatranscriptome	238	Y
F019354	Metagenome / Metatranscriptome	230	Y
F021166	Metagenome / Metatranscriptome	220	Y
F022125	Metagenome	215	Y
F024611	Metagenome	205	Y
F031724	Metagenome	181	Y
F043710	Metagenome	155	Y
F048028	Metagenome	148	Y
F048691	Metagenome	147	Y
F049334	Metagenome	146	Y
F054481	Metagenome	139	Y
F069539	Metagenome	123	Y
F080329	Metagenome / Metatranscriptome	115	Y
F083962	Metagenome	112	Y
F088012	Metagenome	109	Y
F089691	Metagenome / Metatranscriptome	108	Y
F091122	Metagenome	107	Y
F093009	Metagenome	106	Y
F102228	Metagenome	101	Y
F102380	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0153945_1004217	Not Available	3666
Ga0153945_1015261	Not Available	1726
Ga0153945_1027032	Not Available	1186
Ga0153945_1042323	Not Available	864
Ga0153945_1043300	Not Available	849
Ga0153945_1043411	Not Available	847
Ga0153945_1048216	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens	785
Ga0153945_1048837	All Organisms → cellular organisms → Bacteria	777
Ga0153945_1049543	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	769
Ga0153945_1054129	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	721
Ga0153945_1054756	Not Available	715
Ga0153945_1055999	Not Available	704
Ga0153945_1059300	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. AFS	675
Ga0153945_1061573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	657
Ga0153945_1066645	Not Available	620
Ga0153945_1069546	Not Available	601
Ga0153945_1071208	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	591
Ga0153945_1073965	Not Available	575
Ga0153945_1074677	Not Available	571
Ga0153945_1075890	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	565
Ga0153945_1077137	All Organisms → cellular organisms → Eukaryota	558
Ga0153945_1077500	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Omphalotaceae → Collybiopsis → Collybiopsis confluens	557
Ga0153945_1078742	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	550
Ga0153945_1079307	Not Available	548
Ga0153945_1081944	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. AFS	535
Ga0153945_1082144	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	534
Ga0153945_1085210	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus	520
Ga0153945_1086967	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricaceae → Agaricus → Agaricus bisporus → Agaricus bisporus var. burnettii	513
Ga0153945_1087390	Not Available	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0153945_1004217	Ga0153945_10042173	F089691	LDCKIIRRKIKMKNIKNLIREVEPGHEDFSLYFDDDGLTESGGSYNYNLFIVSQSRNRKGFNKGEYNNIRNGIENLLETYIDIESKSNYAQYPSVGSMLLDYKLIDNIHNTKRIKDFTKFFAECCEKPKSHYTNYHDNFTAYNEEMTAKYLTLKTGKEWGVDEAHGYNQGDYVKMVYCKEHYKNGTKNYGEIWLGAGKEFCVIDLNESGEEGSAHYGYIVADCQACRDEDYKKLICEWACIKEEETQLEMIDGSCTYTKYSYRIA*
Ga0153945_1015261	Ga0153945_10152611	F048028	MKSLAESITLLASQLDRLKNVPNSEELCHTINEFPGMMGEVIDFIQEWL
Ga0153945_1027032	Ga0153945_10270322	F054481	MSAIDIYAITNSSDEEFPELLLLRHIAVELHPRGISRPLVGHDGIFICICGREAKRTFISHNPTIPPTTEVLGPLKSSSGLETSYRQLGTMALFSFNNHHEVAMATYDLTSHLSHYRWLQLNILRISHNRAIVKDLAGLDDNVGRVVIRRSGSNNHF
Ga0153945_1036586	Ga0153945_10365861	F088012	KDGSVRLWELDLENLAMNQADTIDPQADADMPEFTAFSHSGNMVATRSGQSHIELLDTTTGEVVLRTDIDKQDYDDMEIAFSPDEDQVAFLSESLITICDTVHPNNRVSFNPWPGKRVQSWDVAFQTRNDLVICGDDDESALVQVWHRQDPAGFKCTHSLDIKIEKHWSSLPAPDGLTVVIVPRYSSAKCYSWNHDTAQFHPIDFVDNPVGIRASKYSPDGRLFACWSGNDSHVRVWDTRTGQLVSKFPTSWVYAMALSPTLIEHSPNDRLIALLLESEETIHLFDVYTGHLYAKILDPGSGVMAFIRDGTKLARCSSD
Ga0153945_1042323	Ga0153945_10423231	F093009	LPTVILRAVGVLGPELTFSLLLFSLEVEEGSEDAFLESSAAETLLEEYPTV*
Ga0153945_1043300	Ga0153945_10433001	F010439	MFKKNSMEFFIGLDYYLYYFTVAVLLLVHGHIIFQNVLWSLDLVT*
Ga0153945_1043411	Ga0153945_10434112	F083962	MLRLLDFENAILDLFEINRITLQYAKVVLWTLLTAIYEDGLIEDPQRRETIIENIERQKEQLLVNILGPR*
Ga0153945_1048216	Ga0153945_10482161	F000950	MLEEDSDDPDSPPENVKINSTSIEEISDSVLPSGKGKGTPKLDFPLGL*
Ga0153945_1048837	Ga0153945_10488371	F017889	MRYSQLSGQQILLALSDSHNVIAAITKYQASLASGTGLPIDDTPRIELMTANLKVVEKIRTEIRALEHELDRQEGAEKSRS*
Ga0153945_1049543	Ga0153945_10495431	F022125	QESLEVEESIWKKGVRKDASTENLGPCHRIKGGIYAKKEESIFTIKREKGGSTDICGRPVEKGIYPTLQVIPDITGTLCGEKEWHTENGTRLSTHKPVDNKKWVPLTPHCRYIGWSRKEKGVYKVEFEIEIQ*
Ga0153945_1054129	Ga0153945_10541291	F031724	TRLVLIVLDLNKEFRVEADASNYATGGVLSMKCPDDL*
Ga0153945_1054756	Ga0153945_10547562	F010439	LSDHPRWMFKKNSMEFFLGLDYYLYYFIVAVLLLVHDHMLFQNIL*
Ga0153945_1055999	Ga0153945_10559991	F091122	VRATGVELPQESSVYNYTPEYVTTHLTEESSENRIRLLEEYSILYIQVPLAMECSKGQGQECRSRQLIKYYVTII*
Ga0153945_1059300	Ga0153945_10593001	F080329	DADIKKKTLATLVITETIFVLGLATTALGAIQSKPFDSSTTPQEVVDTYKSGLPFKQYISLTIKHPAGAEITKQELGRANIECGGQGEDVRTNKVVCHEAISFMNQTCSVDPSISRNCEQIYIPQYLRAQNLNEQQQSKLSYVYLARIADMNHPGTSETLQELTRTSNK*
Ga0153945_1061573	Ga0153945_10615732	F004241	MPSTINLYQIGVWFCVGFFTGAGWAIASVIVGRILSVI*
Ga0153945_1062860	Ga0153945_10628601	F102228	MSRTQAGILVPVARMASASALIEIVNHKSMVPEPGWFNRDRKTFEDWWRAMKLYLKAN
Ga0153945_1066645	Ga0153945_10666451	F000488	MPTIRNTKTLAECLLLKKESMTKKSLLERIGMESTPSTKLYNRLVEADPCWYKVDDFYFAFCPPELHFHKTKKLLCIKEYKELLEPTLDHISPFFTKISENKTWAEDPQYYSL*
Ga0153945_1069546	Ga0153945_10695461	F043710	MEEVSAFVNTACLYIRMKMAEEAAATQVAWVLSYV
Ga0153945_1071208	Ga0153945_10712082	F005805	MIVTLQQQVNTMLLQQQGSRVEVARPQVFSGRMEEVSTFVNAARLYIRMKMMEEAAAT*
Ga0153945_1073965	Ga0153945_10739651	F013487	LLQIATYWFVIA*FDNKSVQKSKVRQAAKDVVKSEVYPQTYSP*
Ga0153945_1074677	Ga0153945_10746771	F021166	MLTVAQVARRIPWLIMGLILVGGLLHLFGPAELERGELIVIGALIVALICFQVWLRRRGV
Ga0153945_1075890	Ga0153945_10758901	F024611	MMAIADNGHFSYENDIELIQFVASEIQKQGLDLNNEENLDSYLNTKFM*
Ga0153945_1077137	Ga0153945_10771372	F031724	VLAAPDLDKEFRVEADALNYATGGVLSMKCSDEL*
Ga0153945_1077500	Ga0153945_10775001	F008928	YDKPSNKNKYPHKTPFQKSSLLGPSKNKNQLLRAWLIKILEKDSDDPDSSSKDIKINSILIEEIPDPVPSSRKGKGMSKLDFLLGL*
Ga0153945_1077685	Ga0153945_10776851	F048691	VIRFHTKYLPSVYSTQMTDQYGLSPEDYVDDLKILSHSYYGQGMLFLILFYLKQQLEHFQVIIATLMLYDFIYHIPQQVSLSICK*
Ga0153945_1078742	Ga0153945_10787421	F003922	NKFNCTNTTERVRDVWRTLQPLREVWMKVGLEKLENHEGVAVRVLLDSRATGLFMDMTFV
Ga0153945_1079307	Ga0153945_10793071	F010439	MFKKNSMEFFVGLDYYLYYFTVAVLLLVHGHMTFQNVLWSPDLVT*
Ga0153945_1081944	Ga0153945_10819441	F019354	METNEMIDESKTTVVIPTELLDDFKHLAIDMKTTVTALIVESMRLYLKEIKK*
Ga0153945_1082144	Ga0153945_10821441	F069539	LIWPEWVRGVETVIEERDLRKRIKRAQEGDKKIVKAVEELKKVEVKTLRDEEWEIEDGVVLKEGRIYIPEGELRGEII*
Ga0153945_1085210	Ga0153945_10852102	F008285	MGKADGLSRRPDWQEGVEKNNEDQKLIKPEWIRGAKTMIEEENLKKRIKKAQKGDEKVVKVVEELK
Ga0153945_1086967	Ga0153945_10869671	F049334	LKRAGIKTLKNEEWKIEDGIVMKERRIYVPEGELRGEIIQLHHDTPVGGYRGRW
Ga0153945_1087390	Ga0153945_10873901	F102380	MSSEALLSSIIPFAGSGLLGYAMGFAFKKILKWMLIIVGFLAG